Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_F18
         (170 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic ac...    23   0.34 
DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    22   0.78 
AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic ac...    21   1.4  
DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholi...    21   1.8  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    20   3.2  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    20   3.2  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    20   3.2  
DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channe...    19   4.2  
AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             19   5.5  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    18   9.7  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      18   9.7  

>AF514804-1|AAM51823.1|  537|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha-3 protein.
          Length = 537

 Score = 23.0 bits (47), Expect = 0.34
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 146 CVGFSRLYCLSPFSLSDGLEAVSLCLS 66
           CVG + L  L  +  SD  E VSLC S
Sbjct: 260 CVGITFLTVLVFYLPSDSGEKVSLCSS 286


>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 21.8 bits (44), Expect = 0.78
 Identities = 13/27 (48%), Positives = 15/27 (55%)
 Frame = -1

Query: 146 CVGFSRLYCLSPFSLSDGLEAVSLCLS 66
           CVG S L  L  +  SD  E VSL +S
Sbjct: 247 CVGISFLSVLVFYLPSDSGEKVSLSIS 273


>AY540846-1|AAS48080.1|  541|Apis mellifera neuronal nicotinic
           acetylcholine receptorApisa2 subunit protein.
          Length = 541

 Score = 21.0 bits (42), Expect = 1.4
 Identities = 9/27 (33%), Positives = 16/27 (59%)
 Frame = -1

Query: 146 CVGFSRLYCLSPFSLSDGLEAVSLCLS 66
           CV  S L  L+ +  +D  E ++LC++
Sbjct: 246 CVSISYLSVLAFYLPADSGEKIALCIN 272


>DQ026032-1|AAY87891.1|  566|Apis mellifera nicotinic acetylcholine
           receptor alpha3subunit protein.
          Length = 566

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 12/27 (44%), Positives = 15/27 (55%)
 Frame = -1

Query: 146 CVGFSRLYCLSPFSLSDGLEAVSLCLS 66
           C+G S L  L  +  SD  E VSL +S
Sbjct: 251 CMGISFLTVLVFYLPSDSGEKVSLSIS 277


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 119 LSPFSLSDGLEAVSLCL 69
           LSP SL+DG      CL
Sbjct: 419 LSPSSLADGARFGGSCL 435


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 9/17 (52%), Positives = 10/17 (58%)
 Frame = -1

Query: 119 LSPFSLSDGLEAVSLCL 69
           LSP SL+DG      CL
Sbjct: 419 LSPSSLADGARFGGSCL 435


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 19.8 bits (39), Expect = 3.2
 Identities = 7/22 (31%), Positives = 10/22 (45%)
 Frame = -3

Query: 96  WSGGGKPLPQRAVGLSLSILLH 31
           W G G+    R + L    L+H
Sbjct: 485 WIGAGRDSDSRLLDLCTKFLMH 506


>DQ667183-1|ABG75735.1|  463|Apis mellifera GABA-gated ion channel
           protein.
          Length = 463

 Score = 19.4 bits (38), Expect = 4.2
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = +1

Query: 94  PSLRENGLKQ*RRLKPTQNVSK 159
           PS +E+G ++ RR     +VSK
Sbjct: 401 PSRKESGRRRRRRTPRYNSVSK 422


>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 5/10 (50%), Positives = 9/10 (90%)
 Frame = -3

Query: 93   SGGGKPLPQR 64
            + GG+P+P+R
Sbjct: 1359 ASGGRPVPER 1368


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 5/11 (45%), Positives = 11/11 (100%)
 Frame = +1

Query: 64  PLRQRLTASRP 96
           P+R++L++S+P
Sbjct: 809 PVREKLSSSQP 819


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 18.2 bits (35), Expect = 9.7
 Identities = 6/8 (75%), Positives = 6/8 (75%)
 Frame = +2

Query: 71  GRGLPPPD 94
           G GL PPD
Sbjct: 330 GHGLQPPD 337


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 36,327
Number of Sequences: 438
Number of extensions: 395
Number of successful extensions: 11
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 36
effective length of database: 130,575
effective search space used:  2611500
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)