Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_F13
(407 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr 1... 31 0.069
SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual 29 0.21
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 27 1.1
SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor Atf1|Sch... 26 2.0
SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomy... 26 2.0
SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual 26 2.6
SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase Ubp2|Schizosacc... 25 3.4
SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1... 25 3.4
SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA polymerase|Sc... 25 3.4
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 25 4.5
SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces... 25 6.0
SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces... 25 6.0
SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyce... 24 7.9
>SPAC4F10.15c |wsp1||WASp homolog|Schizosaccharomyces pombe|chr
1|||Manual
Length = 574
Score = 31.1 bits (67), Expect = 0.069
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = -2
Query: 151 STSSSPAPREMPSGTPPMRLPFITPP 74
STS+ P P +PS PP R+P ++ P
Sbjct: 226 STSAPPIPPSIPSSRPPERVPSLSAP 251
Score = 24.2 bits (50), Expect = 7.9
Identities = 14/34 (41%), Positives = 17/34 (50%)
Frame = -2
Query: 154 PSTSSSPAPREMPSGTPPMRLPFITPPNANDVVS 53
PS SS P +PS + P P PP +N VS
Sbjct: 234 PSIPSSRPPERVPSLSAPAPPPI--PPPSNGTVS 265
>SPAC23A1.17 |||WIP homolog|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1611
Score = 29.5 bits (63), Expect = 0.21
Identities = 13/30 (43%), Positives = 18/30 (60%)
Frame = -2
Query: 163 VQIPSTSSSPAPREMPSGTPPMRLPFITPP 74
V +PS + P P +PS PP+ +P TPP
Sbjct: 1024 VPLPSADAPPIP--VPSTAPPVPIPTSTPP 1051
Score = 26.6 bits (56), Expect = 1.5
Identities = 11/27 (40%), Positives = 16/27 (59%)
Frame = -2
Query: 154 PSTSSSPAPREMPSGTPPMRLPFITPP 74
PS ++ P P +PSG PP+ P + P
Sbjct: 1126 PSVAAPPVP--VPSGAPPVPKPSVAAP 1150
Score = 26.2 bits (55), Expect = 2.0
Identities = 12/28 (42%), Positives = 16/28 (57%)
Frame = -2
Query: 157 IPSTSSSPAPREMPSGTPPMRLPFITPP 74
IP+ S +P P PSG PP+ P + P
Sbjct: 1076 IPAPSGAP-PVPAPSGIPPVPKPSVAAP 1102
Score = 25.8 bits (54), Expect = 2.6
Identities = 11/27 (40%), Positives = 15/27 (55%)
Frame = -2
Query: 154 PSTSSSPAPREMPSGTPPMRLPFITPP 74
PS ++ P P PSG PP+ P + P
Sbjct: 1145 PSVAAPPVPA--PSGAPPVPKPSVAAP 1169
Score = 25.4 bits (53), Expect = 3.4
Identities = 10/28 (35%), Positives = 14/28 (50%)
Frame = -2
Query: 157 IPSTSSSPAPREMPSGTPPMRLPFITPP 74
+P S + P PSG PP+ P + P
Sbjct: 1104 VPKPSVAVPPVPAPSGAPPVPKPSVAAP 1131
Score = 24.6 bits (51), Expect = 6.0
Identities = 11/28 (39%), Positives = 14/28 (50%)
Frame = -2
Query: 157 IPSTSSSPAPREMPSGTPPMRLPFITPP 74
+P+ SS PSG PP+ P PP
Sbjct: 1066 VPAPSSEIPSIPAPSGAPPVPAPSGIPP 1093
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 27.1 bits (57), Expect = 1.1
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -2
Query: 160 QIPSTSSSPAPREMPSGTPPMRLPFITPPNANDVVSDLVMANND 29
+IP S SP R S TPP+ P P N + V + ND
Sbjct: 254 EIPKPSESP--RRSVSSTPPVHPPPPVPQNLSAVNEEFDTKKND 295
>SPBC29B5.01 |atf1|mts1, sss1, gad7|transcription factor
Atf1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 566
Score = 26.2 bits (55), Expect = 2.0
Identities = 11/37 (29%), Positives = 20/37 (54%)
Frame = -2
Query: 154 PSTSSSPAPREMPSGTPPMRLPFITPPNANDVVSDLV 44
PS + +P+ +PSG PP + PP ++ D++
Sbjct: 108 PSLNRNPSLSNIPSGVPPAFARTLLPPVSSIASPDIL 144
>SPAC1687.11 |spb1||rRNA methyltransferase Spb1 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 802
Score = 26.2 bits (55), Expect = 2.0
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = +3
Query: 219 PGGWLKVPLEQCIEGTTCNAHLGKCSEQPVPECN 320
PGGWL+V + C G+ + +P+P C+
Sbjct: 56 PGGWLQVASKTCKPGSLI-VGVDLAPIKPIPNCH 88
>SPAC31A2.02 |trm112||tRNA |Schizosaccharomyces pombe|chr 1|||Manual
Length = 126
Score = 25.8 bits (54), Expect = 2.6
Identities = 14/52 (26%), Positives = 23/52 (44%)
Frame = -3
Query: 288 CLNERCMSSPQCIVLEVPSTIRQVKARRSRHEYSSGRPRLIECRFLLHPVHQ 133
C N++C SSP+ L+V ++ + E+ G I+ LL Q
Sbjct: 11 CSNKKCTSSPEAFPLDVVDAKLAIQQLELKPEFLIGIMPRIDWNALLKTTRQ 62
>SPAC328.06 |ubp2||ubiquitin C-terminal hydrolase
Ubp2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1141
Score = 25.4 bits (53), Expect = 3.4
Identities = 9/22 (40%), Positives = 9/22 (40%)
Frame = +2
Query: 59 DIVSVWWRDEWQPHGWSATWHL 124
D S W D W PH W L
Sbjct: 24 DSPSAGWNDPWSPHSSRYHWQL 45
>SPAC1142.08 |fhl1|SPAC8C9.01|fork head transcription factor Fhl1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 743
Score = 25.4 bits (53), Expect = 3.4
Identities = 10/25 (40%), Positives = 11/25 (44%)
Frame = +2
Query: 86 EWQPHGWSATWHLPRCW*TGCRRNL 160
EW + WS H P W R NL
Sbjct: 319 EWIANNWSYYRHQPPAWHNSIRHNL 343
>SPAC26H5.12 |rpo41||mitochondrial DNA-directed RNA
polymerase|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1120
Score = 25.4 bits (53), Expect = 3.4
Identities = 9/22 (40%), Positives = 12/22 (54%)
Frame = +3
Query: 288 KCSEQPVPECNFHDQQFRHTCE 353
KCSEQ + HD + H C+
Sbjct: 1014 KCSEQNINFAAVHDSYWTHACD 1035
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.0 bits (52), Expect = 4.5
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 153 LLHPVHQHLGRCQVALH 103
LLH + +G+CQV LH
Sbjct: 543 LLHELLSRMGKCQVLLH 559
>SPBC21B10.07 |||glycosyl hydrolase family 16|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 419
Score = 24.6 bits (51), Expect = 6.0
Identities = 9/17 (52%), Positives = 12/17 (70%)
Frame = -3
Query: 219 VKARRSRHEYSSGRPRL 169
+ A S+H YSSGRP +
Sbjct: 179 IMAADSKHNYSSGRPSI 195
>SPCC285.05 |||purine nucleoside transporter |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 348
Score = 24.6 bits (51), Expect = 6.0
Identities = 13/60 (21%), Positives = 26/60 (43%)
Frame = -2
Query: 184 WQATPD*VQIPSTSSSPAPREMPSGTPPMRLPFITPPNANDVVSDLVMANNDKITIFENI 5
W+ D + S++ P MP T L A +++ D+V+ +N+K + +
Sbjct: 158 WEIDTDPYENGSSNEIVYPESMPYQTNLYELNNTLITAAMEIIKDVVLEDNEKAASYRKL 217
>SPCC1494.10 ||SPCC70.01|transcription factor |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 964
Score = 24.2 bits (50), Expect = 7.9
Identities = 13/41 (31%), Positives = 20/41 (48%), Gaps = 4/41 (9%)
Frame = -2
Query: 163 VQIPSTSSS----PAPREMPSGTPPMRLPFITPPNANDVVS 53
+QIP +SSS P+ PS PP +P ++ +S
Sbjct: 64 IQIPKSSSSTAFSPSNNNAPSPFPPKNSSLASPSKISESIS 104
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,794,999
Number of Sequences: 5004
Number of extensions: 38179
Number of successful extensions: 143
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 66
effective length of database: 2,032,214
effective search space used: 140222766
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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