Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_F05
         (180 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces pomb...    29   0.11 
SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr 1|...    27   0.43 
SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces p...    25   1.0  
SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual    24   3.1  
SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase |Schizosacch...    24   3.1  
SPBC17D11.08 |||WD repeat protein, human WDR68 family|Schizosacc...    23   5.3  
SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3 |Schi...    23   7.1  
SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces p...    23   7.1  
SPBC839.10 |usp107|snu71|U1 snRNP-associated protein Usp107|Schi...    22   9.3  
SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr ...    22   9.3  

>SPAC1B1.01 |||transcription factor Rdp1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 478

 Score = 28.7 bits (61), Expect = 0.11
 Identities = 9/18 (50%), Positives = 14/18 (77%)
 Frame = -2

Query: 56  WRRPLNWDSSTEECPAIL 3
           WRRP+N+ S  ++CP+ L
Sbjct: 194 WRRPVNFASHAKQCPSFL 211


>SPAC1B1.02c |||NAD/NADH kinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 537

 Score = 26.6 bits (56), Expect = 0.43
 Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 2/41 (4%)
 Frame = -1

Query: 159 FWSKSEIQDQCTA--DCIVRLARVSSALCFVWLIKYVETPL 43
           FW+ SE+  QC    DC++ +   S+AL   WL + V  P+
Sbjct: 266 FWT-SELCTQCPNLFDCVITVGDDSAALRASWLFQDVVPPV 305


>SPBP8B7.23 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 673

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 9/21 (42%), Positives = 14/21 (66%)
 Frame = -1

Query: 108 RLARVSSALCFVWLIKYVETP 46
           R++R     CF  L+++VETP
Sbjct: 226 RMSRCGHVYCFSCLLRFVETP 246


>SPBP4H10.20 |nhm1|DcpS|m7G|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 304

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = +1

Query: 34  SQFKGRLHILYQPHETESGAYTGQA 108
           S +   +HIL+  HET  G+  G+A
Sbjct: 239 SYYHLHVHILHVDHETGDGSAVGRA 263


>SPAC19D5.07 |uga1||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 474

 Score = 23.8 bits (49), Expect = 3.1
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 64  YQPHETESGAYTGQANYAVCGALILYFTLRPKKSTKI 174
           Y P E    AY G   YA  G   +YF +    + +I
Sbjct: 112 YPPKEWARVAYEGAIKYAPKGQKYVYFQMSGSDANEI 148


>SPBC17D11.08 |||WD repeat protein, human WDR68
           family|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 435

 Score = 23.0 bits (47), Expect = 5.3
 Identities = 13/32 (40%), Positives = 19/32 (59%), Gaps = 2/32 (6%)
 Frame = +2

Query: 5   EWPDTLLLMNPNSRGVST--YFISHTKQRAEL 94
           E+P T LL NP+S G +T    ++ T Q+  L
Sbjct: 107 EYPVTKLLWNPSSVGSNTDSQLLASTDQQLRL 138


>SPBC17A3.10 |pas4||peroxisomal ubiquitin-protein ligase E3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 306

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 9/26 (34%), Positives = 10/26 (38%)
 Frame = -2

Query: 89  PLSVSCG**SMWRRPLNWDSSTEECP 12
           P +  CG    W     W S   ECP
Sbjct: 266 PAATECGHIFCWSCINGWTSKKSECP 291


>SPAC24C9.15c |spn5|mde9, meu28|septin Spn5|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 464

 Score = 22.6 bits (46), Expect = 7.1
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = +2

Query: 20  LLLMNPNSRGVSTYFISHTKQRAELTRARRTMQSAVH*SCISLLDQK 160
           L+++  +S G +T+  S  +      R ++TM    H + +S  DQK
Sbjct: 121 LIVVGESSLGKTTFVNSFLQSNDTNFRPKKTMDFVEHKATLSDGDQK 167


>SPBC839.10 |usp107|snu71|U1 snRNP-associated protein
           Usp107|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 695

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 6/15 (40%), Positives = 10/15 (66%)
 Frame = -2

Query: 62  SMWRRPLNWDSSTEE 18
           S+W  P++W   TE+
Sbjct: 606 SLWALPIDWSKVTED 620


>SPBC27.03 |meu25||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 622

 Score = 22.2 bits (45), Expect = 9.3
 Identities = 13/23 (56%), Positives = 13/23 (56%)
 Frame = +1

Query: 19  SSVDESQFKGRLHILYQPHETES 87
           SSVDE   K RL     P ETES
Sbjct: 180 SSVDEENRKERLSPDSDPVETES 202


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 806,029
Number of Sequences: 5004
Number of extensions: 12298
Number of successful extensions: 33
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 33
length of database: 2,362,478
effective HSP length: 40
effective length of database: 2,162,318
effective search space used: 41084042
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)