Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_F05
         (180 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0059 - 11022306-11022578,11022812-11022881,11022966-110232...    29   0.40 
11_06_0265 - 21788531-21789798,21789914-21789947                       27   1.6  
06_02_0286 - 13802917-13803336                                         27   2.8  
01_06_1588 + 38474698-38477169                                         26   4.9  
03_05_0036 + 20094462-20095296,20111755-20111822,20112265-20112402     25   6.5  

>06_02_0059 -
           11022306-11022578,11022812-11022881,11022966-11023254,
           11023770-11024109
          Length = 323

 Score = 29.5 bits (63), Expect = 0.40
 Identities = 15/50 (30%), Positives = 24/50 (48%)
 Frame = -1

Query: 156 WSKSEIQDQCTADCIVRLARVSSALCFVWLIKYVETPLELGFINRRVSGH 7
           + +  I  QC   C+V    +S A+  ++L ++V TP E      R  GH
Sbjct: 223 YKRKGIDVQCQVPCLVETNMISRAMKDIFLSQFVVTPEEYARAAVRSIGH 272


>11_06_0265 - 21788531-21789798,21789914-21789947
          Length = 433

 Score = 27.5 bits (58), Expect = 1.6
 Identities = 13/21 (61%), Positives = 15/21 (71%)
 Frame = -3

Query: 136 GSVHRRLHSSPGPCKLRSLFR 74
           G+V RRLHSS     LRS+FR
Sbjct: 25  GAVLRRLHSSADRAALRSVFR 45


>06_02_0286 - 13802917-13803336
          Length = 139

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 16/42 (38%), Positives = 19/42 (45%)
 Frame = +1

Query: 52  LHILYQPHETESGAYTGQANYAVCGALILYFTLRPKKSTKIN 177
           LH LYQ  + E GA  G   +      +L  TL PKK    N
Sbjct: 73  LHFLYQDVDYELGAIKGLLPFYAYLNKLLRKTLNPKKGDASN 114


>01_06_1588 + 38474698-38477169
          Length = 823

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 13/37 (35%), Positives = 21/37 (56%)
 Frame = +3

Query: 15  TLFC**IPIQGASPHTLSATRNRERSLHGPGELCSLR 125
           T+F   I    ++  T++ T NR+R +HG G   +LR
Sbjct: 62  TVFTVSIWFAASAGRTVAWTANRDRPVHGAGSKLTLR 98


>03_05_0036 + 20094462-20095296,20111755-20111822,20112265-20112402
          Length = 346

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 14/42 (33%), Positives = 20/42 (47%)
 Frame = +1

Query: 52  LHILYQPHETESGAYTGQANYAVCGALILYFTLRPKKSTKIN 177
           LH LYQ  + E G   G   +      +L  TL PK+  K++
Sbjct: 242 LHFLYQDVDYELGTIKGLLPFYAYLNKLLRKTLNPKEGCKLS 283


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.316    0.132    0.389 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 5,247,563
Number of Sequences: 37544
Number of extensions: 83219
Number of successful extensions: 229
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 228
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 229
length of database: 14,793,348
effective HSP length: 39
effective length of database: 13,329,132
effective search space used: 266582640
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)