Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_F04
         (649 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholi...    25   0.83 
DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chlor...    24   1.5  
DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chlor...    24   1.5  
AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamat...    23   3.4  
Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein RJP...    22   4.4  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       21   7.8  

>DQ026031-1|AAY87890.1|  601|Apis mellifera nicotinic acetylcholine
           receptor alpha1subunit protein.
          Length = 601

 Score = 24.6 bits (51), Expect = 0.83
 Identities = 17/58 (29%), Positives = 28/58 (48%)
 Frame = -3

Query: 263 PPTSHTVKLMFLYSTVSTLNPIVGIVVTISPNLSLYRIVVLPAASKPTINILISFLPK 90
           PPTS TV L+  Y   + +   + +VVTI+     +R  V    ++    + I  LP+
Sbjct: 290 PPTSLTVPLLGKYLLFTMVLVTLSVVVTIAVLNVNFRSPVTHRMARWVRVVFIQVLPR 347


>DQ667186-1|ABG75738.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -2

Query: 300 EIMPPQWSDFVLTAYIPHSETNVFV----FYSLHIEPNSGNCCNNF 175
           ++ P   S+F +   +   E  + V       LH++P   NCC ++
Sbjct: 359 QVEPDNSSNFAMKPLVRQPEDTMSVDRMQHCELHMQPRKKNCCRSW 404


>DQ667185-1|ABG75737.1|  447|Apis mellifera glutamate-gated chloride
           channel protein.
          Length = 447

 Score = 23.8 bits (49), Expect = 1.5
 Identities = 11/46 (23%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = -2

Query: 300 EIMPPQWSDFVLTAYIPHSETNVFV----FYSLHIEPNSGNCCNNF 175
           ++ P   S+F +   +   E  + V       LH++P   NCC ++
Sbjct: 359 QVEPDNSSNFAMKPLVRQPEDTMSVDRMQHCELHMQPRKKNCCRSW 404


>AB161182-1|BAD08344.1| 1040|Apis mellifera metabotropic glutamate
           receptor protein.
          Length = 1040

 Score = 22.6 bits (46), Expect = 3.4
 Identities = 8/14 (57%), Positives = 9/14 (64%)
 Frame = +3

Query: 132 CCW*NYNSIQTQIR 173
           CCW  +N  Q QIR
Sbjct: 605 CCWHCFNCTQYQIR 618


>Z26319-1|CAA81228.1|  464|Apis mellifera royal jelly protein
           RJP57-2 protein.
          Length = 464

 Score = 22.2 bits (45), Expect = 4.4
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = +2

Query: 590 TLTAKCMCATNTQTYMI 640
           +LT + M +TNT  YM+
Sbjct: 189 SLTVQAMDSTNTMVYMV 205


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 21.4 bits (43), Expect = 7.8
 Identities = 7/14 (50%), Positives = 9/14 (64%)
 Frame = +1

Query: 253 DVGGQDKIRPLWRH 294
           DV   DK+ PL+ H
Sbjct: 267 DVSSNDKVHPLYGH 280


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 177,731
Number of Sequences: 438
Number of extensions: 3731
Number of successful extensions: 10
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19560480
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)