Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_F03
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyce...    52   5e-08
SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter Ght7|Schizosa...    29   0.49 
SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr 2||...    26   2.6  
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom...    26   3.4  
SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces ...    25   4.5  
SPAC144.09c |sfc2||RNA polymerase III transcription factor TFIII...    25   4.5  
SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1...    25   4.5  

>SPCC613.05c |rpl35||60S ribosomal protein L35|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 122

 Score = 52.0 bits (119), Expect = 5e-08
 Identities = 31/65 (47%), Positives = 43/65 (66%), Gaps = 2/65 (3%)
 Frame = +1

Query: 202 ESIARVYCVPPE-NEGNLRYHYKNKKYKPLDLRTKKTRAMRKALSXMKQN-QTRKELERS 375
           + IAR+  V  E N    R  YKNKKY PLDLR KKTRA+R+AL+  +Q+ +T K++++ 
Sbjct: 51  KDIARILTVINESNRLAAREAYKNKKYIPLDLRQKKTRAIRRALTPYEQSRKTLKQIKKE 110

Query: 376 LSFHL 390
             F L
Sbjct: 111 RYFPL 115


>SPBC1348.14c |ght7|SPBPB8B6.01c|hexose transporter
           Ght7|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 518

 Score = 28.7 bits (61), Expect = 0.49
 Identities = 12/24 (50%), Positives = 15/24 (62%)
 Frame = -2

Query: 280 YISCSCNGSGGYLHFLVVHSIRGR 209
           YI  SCN +G  + FL VH  +GR
Sbjct: 405 YIFASCNLTGAAIIFLFVHETKGR 428


>SPBC3H7.05c |||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 357

 Score = 26.2 bits (55), Expect = 2.6
 Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
 Frame = -2

Query: 334 CSKPY----A*HESSLFSSPKAYISCSCNGSGGYLHFLVVHSIRGRC 206
           C+KPY    A   +   +  K   SCSC       H     SI GRC
Sbjct: 252 CTKPYFRVIAWDPTIALTGSKFLASCSCFFLSALFHDFAYWSISGRC 298


>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 534

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 11/39 (28%), Positives = 20/39 (51%)
 Frame = -2

Query: 298 FSSPKAYISCSCNGSGGYLHFLVVHSIRGRCFRHTDFES 182
           +S+    +    +  G Y+ + +VH  R    R++DFES
Sbjct: 23  YSTEIQIVGTVTSSDGSYVEYEIVHQKRSVWRRYSDFES 61


>SPBC106.04 |ada1||adenosine deaminase Ada1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 846

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 17/54 (31%), Positives = 26/54 (48%)
 Frame = +1

Query: 190 NPCVESIARVYCVPPENEGNLRYHYKNKKYKPLDLRTKKTRAMRKALSXMKQNQ 351
           NP  ES  R   +  +N+ N RY  +  K    DLRT+K +     +S   +N+
Sbjct: 411 NPIGESRLRTIFLKTDNDINGRYLAELTKEVFTDLRTQKYQMAEYRISIYGRNR 464


>SPAC144.09c |sfc2||RNA polymerase III transcription factor
           TFIIIA|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 374

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/36 (36%), Positives = 15/36 (41%)
 Frame = -2

Query: 313 HESSLFSSPKAYISCSCNGSGGYLHFLVVHSIRGRC 206
           H S +     A+   SC    GY H L  H  RG C
Sbjct: 256 HISVIHEGNMAFHCDSCGTKFGYKHMLQRHLERGTC 291


>SPAC110.01 |ppk1|SPAC140.05|serine/threonine protein kinase Ppk1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1023

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 16/66 (24%), Positives = 30/66 (45%)
 Frame = +1

Query: 181 NSQNPCVESIARVYCVPPENEGNLRYHYKNKKYKPLDLRTKKTRAMRKALSXMKQNQTRK 360
           N + P  +++ +   + PEN+  L+Y ++ K+  P    T  +           QN T +
Sbjct: 417 NERIPSAKALKKQKHLVPENKSKLQYVWQKKESLPYANLTSASNT--HFFLSENQNDTSE 474

Query: 361 ELERSL 378
            L R+L
Sbjct: 475 RLTRTL 480


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,561,852
Number of Sequences: 5004
Number of extensions: 25325
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 82
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)