Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_F03
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0340 + 17946133-17946136,17946207-17946342,17946428-179465...    43   1e-04
06_03_1515 - 30707600-30707613,30708093-30708167,30708596-307086...    30   0.85 
12_01_1112 - 11866376-11866447,11866528-11866662,11866772-118669...    29   2.6  
03_02_0123 + 5745390-5745576,5745993-5746082,5746255-5746351,574...    28   4.5  
04_01_0072 - 784922-785567,785673-786406                               27   6.0  

>02_03_0340 +
           17946133-17946136,17946207-17946342,17946428-17946584,
           17947330-17947458
          Length = 141

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 35/96 (36%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
 Frame = +1

Query: 58  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVLSYWWCTSN--SQNPCVE-SIARVYCV 228
           M ++K  ELR K+               + LRV        N  S+   V  SIARV  V
Sbjct: 1   MARIKVDELRGKNKAELQAQLKDLKAELSLLRVAKVTGGAPNKLSKIKVVRTSIARVLTV 60

Query: 229 PPENE-GNLRYHYKNKKYKPLDLRTKKTRAMRKALS 333
             + +   LR  YK K   PLDLR KKTRA+R+ L+
Sbjct: 61  ISQKQRAALREAYKKKSLLPLDLRPKKTRAIRRRLT 96


>06_03_1515 -
           30707600-30707613,30708093-30708167,30708596-30708647,
           30708751-30708831,30709145-30709219,30709870-30709977,
           30710026-30710032,30710133-30710268,30710361-30710685
          Length = 290

 Score = 30.3 bits (65), Expect = 0.85
 Identities = 17/30 (56%), Positives = 20/30 (66%), Gaps = 2/30 (6%)
 Frame = +1

Query: 250 LRYHYKNKKYK--PLDLRTKKTRAMRKALS 333
           LR  YK KK    PLDLR KKT A+R+ L+
Sbjct: 160 LREAYKKKKKSLLPLDLRPKKTCAIRRRLT 189


>12_01_1112 -
           11866376-11866447,11866528-11866662,11866772-11866921,
           11867263-11867338,11867426-11867559,11867655-11867747,
           11868456-11868589,11868696-11868744,11869271-11869441,
           11870291-11870452
          Length = 391

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = +1

Query: 145 NLRVLSYWWCTSNSQNPCVESIARVYCV-PPENEGNLRYHYKNKKYK 282
           N  +  Y    S+  + CV+++ R++CV P  N   +R  Y   KYK
Sbjct: 324 NSTLAHYTQYKSSELSDCVKALHRLFCVGPGSNLPAIREKYTQHKYK 370


>03_02_0123 +
           5745390-5745576,5745993-5746082,5746255-5746351,
           5746446-5746584
          Length = 170

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = +1

Query: 271 KKYKPLDLRTKKTRAMRKALSXMKQNQTRKELE 369
           KKY   D R K ++ ++  L   KQN+ + E E
Sbjct: 97  KKYAEFDSRFKSSQVLKDLLEKSKQNKLKNERE 129


>04_01_0072 - 784922-785567,785673-786406
          Length = 459

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/23 (52%), Positives = 16/23 (69%)
 Frame = -2

Query: 277 ISCSCNGSGGYLHFLVVHSIRGR 209
           I  +  GSGGY++FLV  + RGR
Sbjct: 361 IETNSRGSGGYINFLVDTTRRGR 383


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,305,579
Number of Sequences: 37544
Number of extensions: 164116
Number of successful extensions: 408
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 406
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 408
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)