Samia BLAST Result against human

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_F03
         (482 letters)

Database: human 
           237,096 sequences; 76,859,062 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U12465-1|AAA51648.1|  123|Homo sapiens ribosomal protein L35 pro...    58   1e-08
CR456877-1|CAG33158.1|  123|Homo sapiens RPL35 protein.                58   1e-08
BC094828-1|AAH94828.1|  123|Homo sapiens ribosomal protein L35 p...    58   1e-08
BC071915-1|AAH71915.1|  123|Homo sapiens ribosomal protein L35 p...    58   1e-08
BC010919-1|AAH10919.1|  123|Homo sapiens RPL35 protein protein.        58   1e-08
BC000348-1|AAH00348.1|  123|Homo sapiens ribosomal protein L35 p...    58   1e-08
AL354928-8|CAI39639.1|  123|Homo sapiens ribosomal protein L35 p...    58   1e-08

>U12465-1|AAA51648.1|  123|Homo sapiens ribosomal protein L35
           protein.
          Length = 123

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
 Frame = +1

Query: 58  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVLSYWWCTSNSQNPCV---ESIARVYCV 228
           M K+K  +LR K                + LRV       ++  +      +SIARV  V
Sbjct: 1   MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60

Query: 229 PPENEG-NLRYHYKNKKYKPLDLRTKKTRAMRKALSXMKQNQTRKELER 372
             + +  NLR  YK KKYKPLDLR KKTRAMR+ L+  ++N   K+ +R
Sbjct: 61  INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQR 109


>CR456877-1|CAG33158.1|  123|Homo sapiens RPL35 protein.
          Length = 123

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
 Frame = +1

Query: 58  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVLSYWWCTSNSQNPCV---ESIARVYCV 228
           M K+K  +LR K                + LRV       ++  +      +SIARV  V
Sbjct: 1   MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60

Query: 229 PPENEG-NLRYHYKNKKYKPLDLRTKKTRAMRKALSXMKQNQTRKELER 372
             + +  NLR  YK KKYKPLDLR KKTRAMR+ L+  ++N   K+ +R
Sbjct: 61  INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQR 109


>BC094828-1|AAH94828.1|  123|Homo sapiens ribosomal protein L35
           protein.
          Length = 123

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
 Frame = +1

Query: 58  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVLSYWWCTSNSQNPCV---ESIARVYCV 228
           M K+K  +LR K                + LRV       ++  +      +SIARV  V
Sbjct: 1   MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60

Query: 229 PPENEG-NLRYHYKNKKYKPLDLRTKKTRAMRKALSXMKQNQTRKELER 372
             + +  NLR  YK KKYKPLDLR KKTRAMR+ L+  ++N   K+ +R
Sbjct: 61  INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQR 109


>BC071915-1|AAH71915.1|  123|Homo sapiens ribosomal protein L35
           protein.
          Length = 123

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
 Frame = +1

Query: 58  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVLSYWWCTSNSQNPCV---ESIARVYCV 228
           M K+K  +LR K                + LRV       ++  +      +SIARV  V
Sbjct: 1   MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60

Query: 229 PPENEG-NLRYHYKNKKYKPLDLRTKKTRAMRKALSXMKQNQTRKELER 372
             + +  NLR  YK KKYKPLDLR KKTRAMR+ L+  ++N   K+ +R
Sbjct: 61  INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQR 109


>BC010919-1|AAH10919.1|  123|Homo sapiens RPL35 protein protein.
          Length = 123

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
 Frame = +1

Query: 58  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVLSYWWCTSNSQNPCV---ESIARVYCV 228
           M K+K  +LR K                + LRV       ++  +      +SIARV  V
Sbjct: 1   MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60

Query: 229 PPENEG-NLRYHYKNKKYKPLDLRTKKTRAMRKALSXMKQNQTRKELER 372
             + +  NLR  YK KKYKPLDLR KKTRAMR+ L+  ++N   K+ +R
Sbjct: 61  INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQR 109


>BC000348-1|AAH00348.1|  123|Homo sapiens ribosomal protein L35
           protein.
          Length = 123

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
 Frame = +1

Query: 58  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVLSYWWCTSNSQNPCV---ESIARVYCV 228
           M K+K  +LR K                + LRV       ++  +      +SIARV  V
Sbjct: 1   MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60

Query: 229 PPENEG-NLRYHYKNKKYKPLDLRTKKTRAMRKALSXMKQNQTRKELER 372
             + +  NLR  YK KKYKPLDLR KKTRAMR+ L+  ++N   K+ +R
Sbjct: 61  INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQR 109


>AL354928-8|CAI39639.1|  123|Homo sapiens ribosomal protein L35
           protein.
          Length = 123

 Score = 58.4 bits (135), Expect = 1e-08
 Identities = 40/109 (36%), Positives = 55/109 (50%), Gaps = 4/109 (3%)
 Frame = +1

Query: 58  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVLSYWWCTSNSQNPCV---ESIARVYCV 228
           M K+K  +LR K                + LRV       ++  +      +SIARV  V
Sbjct: 1   MAKIKARDLRGKKKEELLKQLDDLKVELSQLRVAKVTGGAASKLSKIRVVRKSIARVLTV 60

Query: 229 PPENEG-NLRYHYKNKKYKPLDLRTKKTRAMRKALSXMKQNQTRKELER 372
             + +  NLR  YK KKYKPLDLR KKTRAMR+ L+  ++N   K+ +R
Sbjct: 61  INQTQKENLRKFYKGKKYKPLDLRPKKTRAMRRRLNKHEENLKTKKQQR 109


  Database: human
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 76,859,062
  Number of sequences in database:  237,096
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 55,660,565
Number of Sequences: 237096
Number of extensions: 882316
Number of successful extensions: 2087
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2040
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 2087
length of database: 76,859,062
effective HSP length: 84
effective length of database: 56,942,998
effective search space used: 4327667848
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)