Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_F03
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal prote...    42   3e-04
U88182-2|AAB42308.4|  961|Caenorhabditis elegans Patched related...    28   4.1  
Z50796-1|CAA90668.1|  490|Caenorhabditis elegans Hypothetical pr...    27   5.4  
Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical p...    27   7.1  
Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical p...    27   7.1  
Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical pr...    27   9.4  
U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical pr...    27   9.4  
AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.     27   9.4  

>L14429-5|AAA28216.1|  123|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 35 protein.
          Length = 123

 Score = 41.5 bits (93), Expect = 3e-04
 Identities = 30/96 (31%), Positives = 45/96 (46%), Gaps = 4/96 (4%)
 Frame = +1

Query: 58  MGKVKCSELRTKDXXXXXXXXXXXXXXXTNLRVLSYWWCTSNSQNPCV---ESIARVYCV 228
           M K+KC  LR +                  LRV       ++  +      ++IAR+  V
Sbjct: 1   MTKLKCKSLRGEKKDALQKKLDEQKTELATLRVSKVTGGAASKLSKIRVVRKNIARLLTV 60

Query: 229 PPENEGN-LRYHYKNKKYKPLDLRTKKTRAMRKALS 333
             + +   LR  Y + KYKP+DLR KKTRA+R+ L+
Sbjct: 61  INQTQKQELRKFYADHKYKPIDLRLKKTRAIRRRLT 96


>U88182-2|AAB42308.4|  961|Caenorhabditis elegans Patched related
           family protein 5 protein.
          Length = 961

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/47 (27%), Positives = 24/47 (51%)
 Frame = -3

Query: 309 SLLCSQVQRLIFLVLVMVAEVTFIFWWYTVYAGDAFDTRILRVRCTP 169
           ++ C  +    F V+VM+   T I+W++ +Y      TR+  V+  P
Sbjct: 516 NVYCKILSNKFFAVVVMLG--TAIYWYFAIYGLMTMKTRLDAVKILP 560


>Z50796-1|CAA90668.1|  490|Caenorhabditis elegans Hypothetical
           protein T05A6.4 protein.
          Length = 490

 Score = 27.5 bits (58), Expect = 5.4
 Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -3

Query: 282 LIFLVLVMVAEVTFIFWWYTVYAGDAFDTR--ILRVRCTPPVT 160
           ++F  +++   +T I WWY V A   +D +  +L   C P  T
Sbjct: 1   MLFNSIMIKHVMTLILWWYLVTADFEYDLQMVVLTHSCEPECT 43


>Z98866-21|CAD56612.1|  743|Caenorhabditis elegans Hypothetical
           protein Y49E10.23b protein.
          Length = 743

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 253 RYHYKNKKYKPLDLRTKKTRAMRKALSXMKQNQTRKELE 369
           R   +N +Y+   LRT + R + + L    QNQ +KEL+
Sbjct: 59  RLESQNAEYREKLLRTIRERDLNEELLKNVQNQHKKELD 97


>Z98866-20|CAB11567.1|  734|Caenorhabditis elegans Hypothetical
           protein Y49E10.23a protein.
          Length = 734

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/39 (35%), Positives = 22/39 (56%)
 Frame = +1

Query: 253 RYHYKNKKYKPLDLRTKKTRAMRKALSXMKQNQTRKELE 369
           R   +N +Y+   LRT + R + + L    QNQ +KEL+
Sbjct: 59  RLESQNAEYREKLLRTIRERDLNEELLKNVQNQHKKELD 97


>Z83232-1|CAB05755.3| 1764|Caenorhabditis elegans Hypothetical
           protein K04B12.1 protein.
          Length = 1764

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 157 LSYWWCTSNSQNPCVESIARVYCVPP 234
           LS  WC     + C ES A   C PP
Sbjct: 723 LSCGWCNRQCSHECHESKATAVCDPP 748


>U23521-9|AAC46809.2|  499|Caenorhabditis elegans Hypothetical
           protein F41C3.2 protein.
          Length = 499

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 14/46 (30%), Positives = 26/46 (56%), Gaps = 2/46 (4%)
 Frame = -3

Query: 360 LPSLILLHXA--QSLTHSTSLLCSQVQRLIFLVLVMVAEVTFIFWW 229
           LPS+I+L+    +S   +T L+CS +  L  ++  +  +  F F+W
Sbjct: 106 LPSIIILYFLTNRSGVKTTFLICSMLSFLSTILTPIATQYGFWFFW 151


>AB162421-1|BAD36749.1| 1766|Caenorhabditis elegans plexin protein.
          Length = 1766

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = +1

Query: 157 LSYWWCTSNSQNPCVESIARVYCVPP 234
           LS  WC     + C ES A   C PP
Sbjct: 725 LSCGWCNRQCSHECHESKATAVCDPP 750


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,760,920
Number of Sequences: 27780
Number of extensions: 143613
Number of successful extensions: 343
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 340
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 343
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)