Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E24
         (416 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0226 + 15887835-15891188                                         29   1.5  
02_05_0156 + 26341904-26342801,26343469-26344148                       27   6.0  

>12_02_0226 + 15887835-15891188
          Length = 1117

 Score = 29.1 bits (62), Expect = 1.5
 Identities = 17/39 (43%), Positives = 22/39 (56%)
 Frame = +1

Query: 1   LEMLRQIVVCGTRTMEAMKAFQRMLETGLTC*SAFEEVL 117
           LE LR   V G +  EA K FQ+M+   +   SAFE +L
Sbjct: 386 LEALRSFCVSG-KIEEAQKIFQQMMNKSIASSSAFEILL 423


>02_05_0156 + 26341904-26342801,26343469-26344148
          Length = 525

 Score = 27.1 bits (57), Expect = 6.0
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +3

Query: 255 RTINKKDNKIIMHKRNHKITMHNKT 329
           R +  +   II ++RNH + MHN+T
Sbjct: 457 RIVKSEIVHIIQNRRNHTLDMHNRT 481


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 7,844,498
Number of Sequences: 37544
Number of extensions: 139805
Number of successful extensions: 443
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 443
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 754585524
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)