Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_E23
(489 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
06_03_1152 + 28044667-28045239,28045330-28045750,28045940-28046298 31 0.50
03_02_0981 + 12917195-12917572,12917661-12917818,12918732-129187... 30 1.1
04_03_0305 - 14125193-14125421,14125666-14127104 29 1.5
10_02_0157 - 5954439-5954801,5956244-5956270,5956465-5956526,595... 29 2.0
12_02_0674 - 21745321-21746223,21746229-21747608 29 2.6
12_02_0118 - 13869237-13869307,13869375-13869465,13870321-138704... 28 3.5
07_01_1046 - 9138000-9138293,9139550-9139714,9139862-9140010,914... 28 4.6
01_06_0146 + 26969011-26969995,26970878-26970930 28 4.6
08_02_0953 + 22987254-22987604 27 6.1
01_06_1513 - 37884198-37884485,37884966-37886951,37886976-378873... 27 8.1
>06_03_1152 + 28044667-28045239,28045330-28045750,28045940-28046298
Length = 450
Score = 31.1 bits (67), Expect = 0.50
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 187 GITGSRYCRMMDNHVWHWCV 128
G+ GSR+ +MM W WC+
Sbjct: 8 GVNGSRWAKMMSTDSWRWCL 27
>03_02_0981 +
12917195-12917572,12917661-12917818,12918732-12918765,
12918942-12919074,12919167-12919221,12919281-12920064,
12920440-12920769,12920788-12920895,12921259-12921678,
12921775-12921847,12922291-12922376,12922873-12922992,
12923086-12923156,12923350-12923449
Length = 949
Score = 29.9 bits (64), Expect = 1.1
Identities = 12/31 (38%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Frame = -2
Query: 263 CIQCRP---SLCCCESFAYSACPECIGRWYN 180
C QCR ++CC C CI RWY+
Sbjct: 151 CHQCRRVANTICCTSCDRRGYCTNCISRWYS 181
>04_03_0305 - 14125193-14125421,14125666-14127104
Length = 555
Score = 29.5 bits (63), Expect = 1.5
Identities = 19/62 (30%), Positives = 30/62 (48%), Gaps = 2/62 (3%)
Frame = -3
Query: 355 DALAVGVPSMYTNNLPASTFVCQSIA--ANTEIVSNVAPVYAVVKVLHTLHVLNALVGGI 182
DA GVP +P + V + A EIV+ VA A K + LH+++A+ +
Sbjct: 475 DAAVFGVPDEEAGEVPVACVVRRHGAEEGEEEIVAYVAERVASYKRVRVLHIVDAIPKSV 534
Query: 181 TG 176
+G
Sbjct: 535 SG 536
>10_02_0157 -
5954439-5954801,5956244-5956270,5956465-5956526,
5956971-5957592
Length = 357
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 378 QSPIKQIPTLWLLAFPACIPTTFQPRPSYASPSLPT 271
Q+ + Q P + P +PTT P P+ +P LPT
Sbjct: 17 QAAMAQRPGMPPAVVPPSLPTTTPPAPTVVAPPLPT 52
>12_02_0674 - 21745321-21746223,21746229-21747608
Length = 760
Score = 28.7 bits (61), Expect = 2.6
Identities = 21/84 (25%), Positives = 39/84 (46%), Gaps = 9/84 (10%)
Frame = -1
Query: 468 YSELITPSCTPCAMRDLLVD---NCFSGGRSSRQSPIKQIPTL-----WLLAFPACIPTT 313
Y + P+C P + +D NC GGR +++ ++ P L + +P++
Sbjct: 349 YFSVEPPACVPAETAMVELDDKGNCLGGGRPEQKTSLECAPLLKRPIDCRTNTCSALPSS 408
Query: 312 FQPRPSYASPSLPTQKLYPM-SPQ 244
+P P +P+ PT P+ SP+
Sbjct: 409 SKPAPKKITPTPPTLAPPPLISPK 432
>12_02_0118 -
13869237-13869307,13869375-13869465,13870321-13870440,
13870668-13870795,13871159-13871270,13871719-13871817,
13871918-13871992,13872099-13872320,13873177-13874034
Length = 591
Score = 28.3 bits (60), Expect = 3.5
Identities = 17/49 (34%), Positives = 21/49 (42%), Gaps = 2/49 (4%)
Frame = -1
Query: 396 GGRSSRQSPIK--QIPTLWLLAFPACIPTTFQPRPSYASPSLPTQKLYP 256
GG S I+ Q P FP P QP P +A P+ P Q+ P
Sbjct: 47 GGNGPVPSSIRAPQAPPPGARPFPGSPPPPSQPPPPFARPAAPVQQQPP 95
>07_01_1046 -
9138000-9138293,9139550-9139714,9139862-9140010,
9140363-9140510,9140659-9140727,9140827-9141087,
9141498-9141692,9142932-9143048,9143701-9144477
Length = 724
Score = 27.9 bits (59), Expect = 4.6
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +2
Query: 77 CSRECWGAKPPTDTRFLNTPVPYVII 154
CS EC + P TD R + T PYV +
Sbjct: 48 CSTECGKSDPHTDVRKIITSDPYVSV 73
>01_06_0146 + 26969011-26969995,26970878-26970930
Length = 345
Score = 27.9 bits (59), Expect = 4.6
Identities = 15/35 (42%), Positives = 16/35 (45%)
Frame = -1
Query: 339 AFPACIPTTFQPRPSYASPSLPTQKLYPMSPQFML 235
A P P QP P PSLP P SP+ ML
Sbjct: 101 AAPPPAPAPDQPAPPSPPPSLPPSPPAPGSPESML 135
>08_02_0953 + 22987254-22987604
Length = 116
Score = 27.5 bits (58), Expect = 6.1
Identities = 13/34 (38%), Positives = 18/34 (52%), Gaps = 2/34 (5%)
Frame = +2
Query: 83 RECWGAKPPTDTRFLNTPVPYVIIHHT--AIPTA 178
RE G KPP D + P+P V++ H +P A
Sbjct: 31 RELLGEKPPLDPAVMAMPMPMVMMVHVVGVVPAA 64
>01_06_1513 -
37884198-37884485,37884966-37886951,37886976-37887305,
37887397-37887471,37887543-37887734,37887922-37888173,
37888248-37888803,37888881-37889088,37889624-37889736,
37890029-37890060,37890545-37890619
Length = 1368
Score = 27.1 bits (57), Expect = 8.1
Identities = 15/71 (21%), Positives = 32/71 (45%), Gaps = 3/71 (4%)
Frame = +2
Query: 245 WGDIGYNFCVGSDGLAYEGRGWKVVGIHAGNANSQSVGICLIGDWRDDL---PPEKQLST 415
W ++ +GSD L + + V +H + + Q + + W D++ PE +
Sbjct: 294 WQFHNFHMLLGSDLLIFSNEKYMAVSLHLWDVSRQVTPLNWLEAWLDNIMASVPELAICY 353
Query: 416 SKSLIAQGVQL 448
++ + QG +L
Sbjct: 354 HQNGVVQGYEL 364
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,586,261
Number of Sequences: 37544
Number of extensions: 377686
Number of successful extensions: 1200
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 1157
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1200
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1011709100
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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