Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E22
         (124 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces ...    25   1.0  
SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis Mei2...    24   3.2  
SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase Alg11|Schiz...    24   3.2  
SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalyt...    23   4.2  
SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    23   5.6  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    23   7.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    22   9.7  
SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces ...    22   9.7  

>SPBC12C2.01c ||SPBC17F3.03c|sequence orphan|Schizosaccharomyces
          pombe|chr 2|||Manual
          Length = 318

 Score = 25.4 bits (53), Expect = 1.0
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = -2

Query: 84 FAPPMPNTPKKLYT 43
          F  P+PNTPKK Y+
Sbjct: 35 FFIPLPNTPKKFYS 48


>SPAC27D7.03c |mei2||RNA-binding protein involved in meiosis
           Mei2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 750

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 14/32 (43%), Positives = 16/32 (50%), Gaps = 1/32 (3%)
 Frame = -3

Query: 110 HYGPPRELCLRHPCPIRR-RSYTRKLSLSNSV 18
           HY P   L L  P PIR  +    K S SNS+
Sbjct: 47  HYPPKSTLLLSGPSPIRNIQLSATKSSESNSI 78


>SPCC330.08 |alg11|gmd3|alpha-1,2-mannosyltransferase
           Alg11|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 471

 Score = 23.8 bits (49), Expect = 3.2
 Identities = 10/27 (37%), Positives = 13/27 (48%)
 Frame = +3

Query: 3   SADNSDTIRQ*KLSCITSSAYWAWVAQ 83
           S D   +++Q  L      AYW W AQ
Sbjct: 195 STDMLKSLKQVSLLAKVKMAYWRWFAQ 221


>SPBC106.10 |pka1|tpk, git6|cAMP-dependent protein kinase catalytic
           subunit Pka1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 512

 Score = 23.4 bits (48), Expect = 4.2
 Identities = 9/18 (50%), Positives = 11/18 (61%)
 Frame = +2

Query: 47  YNFFGVLGMGGANRVHVV 100
           +NF   LG G   RVH+V
Sbjct: 201 FNFLQTLGTGSFGRVHLV 218


>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
            pombe|chr 3|||Manual
          Length = 2344

 Score = 23.0 bits (47), Expect = 5.6
 Identities = 8/20 (40%), Positives = 13/20 (65%)
 Frame = -2

Query: 87   LFAPPMPNTPKKLYTKAFIV 28
            +FAPPMP T  + Y  + ++
Sbjct: 1525 VFAPPMPITEDQTYVPSRVI 1544


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 22.6 bits (46), Expect = 7.4
 Identities = 6/12 (50%), Positives = 7/12 (58%)
 Frame = +3

Query: 66  WAWVAQTEFTWW 101
           W W+A   F WW
Sbjct: 4   WFWLAILVFRWW 15


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 6/19 (31%), Positives = 12/19 (63%)
 Frame = -2

Query: 81  APPMPNTPKKLYTKAFIVE 25
           +PP P+TP    T ++ ++
Sbjct: 422 SPPSPSTPSNTQTDSYFIQ 440


>SPAC17A5.11 |rec12|spo11|endonuclease Rec12|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 345

 Score = 22.2 bits (45), Expect = 9.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +3

Query: 36  KLSCITSSAYWAWVAQTEFTWWTI 107
           ++S ITS+A W  V + E  + T+
Sbjct: 164 RISSITSTAKWVLVIEKEAVFQTL 187


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 631,416
Number of Sequences: 5004
Number of extensions: 7975
Number of successful extensions: 24
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 24
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 24
length of database: 2,362,478
effective HSP length: 21
effective length of database: 2,257,394
effective search space used: 42890486
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)