Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E22
         (124 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_06_0199 - 26306442-26306615                                         27   2.1  
11_06_0340 - 22500411-22500566,22500660-22500783,22500914-225010...    27   2.8  
03_05_0798 + 27798095-27798190,27798325-27798366,27799152-277991...    26   3.7  
08_02_0775 + 21070898-21071290,21071406-21071504,21075103-210751...    26   4.9  
05_04_0226 + 19215091-19215172,19215281-19215394,19215508-192155...    26   4.9  
02_01_0138 + 999809-999821,1000456-1001341,1001424-1003221,10037...    26   4.9  
04_03_0546 + 17026937-17027203                                         25   6.5  
02_05_0725 - 31247066-31247158,31247499-31247528,31247688-312477...    25   8.6  

>05_06_0199 - 26306442-26306615
          Length = 57

 Score = 27.1 bits (57), Expect = 2.1
 Identities = 9/20 (45%), Positives = 13/20 (65%)
 Frame = +3

Query: 51  TSSAYWAWVAQTEFTWWTIV 110
           T  ++WA V+  E+TWW  V
Sbjct: 28  THRSWWADVSDREYTWWADV 47


>11_06_0340 -
           22500411-22500566,22500660-22500783,22500914-22501080,
           22501157-22501336,22501544-22502427,22502728-22502843,
           22503745-22504217
          Length = 699

 Score = 26.6 bits (56), Expect = 2.8
 Identities = 13/31 (41%), Positives = 16/31 (51%)
 Frame = -3

Query: 122 PMEHHYGPPRELCLRHPCPIRRRSYTRKLSL 30
           P+E      RELC R  C + R +  R LSL
Sbjct: 97  PVEMSTAAHRELCFRQLCALVREAGVRPLSL 127


>03_05_0798 +
          27798095-27798190,27798325-27798366,27799152-27799190,
          27799238-27799420
          Length = 119

 Score = 26.2 bits (55), Expect = 3.7
 Identities = 8/19 (42%), Positives = 13/19 (68%)
 Frame = -1

Query: 82 CATHAQYAEEVIHESFHCR 26
          C TH   + ++I +SFHC+
Sbjct: 19 CHTHLGLSSDIISKSFHCK 37


>08_02_0775 +
           21070898-21071290,21071406-21071504,21075103-21075126,
           21076344-21076391,21076536-21076788,21076945-21077055,
           21077544-21077680,21077778-21077891,21077982-21078181,
           21078268-21078516,21078730-21078886
          Length = 594

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +2

Query: 44  VYNFFGVLGMGGANRVHVVDHSG 112
           VY+FFG  G  G  R+  +D +G
Sbjct: 302 VYSFFGFNGTAGVWRIAAIDDAG 324


>05_04_0226 +
           19215091-19215172,19215281-19215394,19215508-19215590,
           19215682-19215820,19215862-19216191,19216414-19216693,
           19216795-19216956,19217134-19217349,19217458-19217495,
           19217597-19217760,19217833-19217946,19218042-19218083,
           19218180-19218983
          Length = 855

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = -3

Query: 71  CPIRRRSYTRKLSLSNSVRVVCR 3
           C  RRR Y   + L  ++RV CR
Sbjct: 176 CAERRRLYNELIELRGNIRVFCR 198


>02_01_0138 +
           999809-999821,1000456-1001341,1001424-1003221,
           1003716-1003805,1004034-1004111,1004513-1004518,
           1004849-1004958,1005174-1005369
          Length = 1058

 Score = 25.8 bits (54), Expect = 4.9
 Identities = 9/13 (69%), Positives = 11/13 (84%)
 Frame = -1

Query: 121 RWNTTMVHHVNSV 83
           RW T M+HHVNS+
Sbjct: 510 RWLTQMLHHVNSL 522


>04_03_0546 + 17026937-17027203
          Length = 88

 Score = 25.4 bits (53), Expect = 6.5
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -3

Query: 95  RELCLRHPCPIRRRSYT 45
           R+ CLR PC  R +SYT
Sbjct: 60  RQACLRTPCSGRGQSYT 76


>02_05_0725 -
           31247066-31247158,31247499-31247528,31247688-31247736,
           31247781-31247980,31248128-31248241,31248353-31248489,
           31248597-31248707,31249608-31249860,31249959-31250025,
           31250058-31250113,31250324-31250560
          Length = 448

 Score = 25.0 bits (52), Expect = 8.6
 Identities = 11/21 (52%), Positives = 12/21 (57%)
 Frame = +2

Query: 50  NFFGVLGMGGANRVHVVDHSG 112
           NFFG  G  G  R  V+D SG
Sbjct: 236 NFFGYNGTAGVWRRQVIDESG 256


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 4,433,943
Number of Sequences: 37544
Number of extensions: 59994
Number of successful extensions: 204
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 204
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 204
length of database: 14,793,348
effective HSP length: 21
effective length of database: 14,004,924
effective search space used: 266093556
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)