Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E22
         (124 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic ac...    21   1.8  
AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.       19   5.5  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    19   7.3  

>AY500239-1|AAR92109.1|  555|Apis mellifera neuronal nicotinic
           acetylcholine receptoralpha7-1 protein.
          Length = 555

 Score = 20.6 bits (41), Expect = 1.8
 Identities = 10/27 (37%), Positives = 15/27 (55%), Gaps = 1/27 (3%)
 Frame = -1

Query: 100 HHVNSVCAT-HAQYAEEVIHESFHCRI 23
           HH +S  AT H Q++  + H S+   I
Sbjct: 431 HHHHSHAATPHHQHSTPLAHSSYPAAI 457


>AB270697-1|BAF75928.1|  735|Apis mellifera FoxP protein protein.
          Length = 735

 Score = 19.0 bits (37), Expect = 5.5
 Identities = 6/12 (50%), Positives = 8/12 (66%)
 Frame = -2

Query: 78  PPMPNTPKKLYT 43
           PP+PN P  + T
Sbjct: 430 PPLPNMPGSMPT 441


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 18.6 bits (36), Expect = 7.3
 Identities = 7/17 (41%), Positives = 9/17 (52%)
 Frame = -2

Query: 84  FAPPMPNTPKKLYTKAF 34
           F PP PN     Y++ F
Sbjct: 319 FLPPPPNLDYHDYSRQF 335



 Score = 18.2 bits (35), Expect = 9.6
 Identities = 9/31 (29%), Positives = 15/31 (48%)
 Frame = -1

Query: 121 RWNTTMVHHVNSVCATHAQYAEEVIHESFHC 29
           R N   V+H+++    HA +   + H  F C
Sbjct: 267 RKNYGGVYHLDNHHVHHANHHAILGHSGFLC 297


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 43,484
Number of Sequences: 438
Number of extensions: 651
Number of successful extensions: 4
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 21
effective length of database: 137,145
effective search space used:  2605755
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 35 (18.9 bits)