Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E21
         (508 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0146 + 41464554-41464943,41465607-41465945,41467582-414676...    27   6.5  
01_07_0142 + 41433580-41433969,41434633-41434971,41436609-414366...    27   6.5  

>01_07_0146 +
           41464554-41464943,41465607-41465945,41467582-41467662,
           41468487-41468578,41468667-41468710,41468788-41468843,
           41469656-41469814,41469922-41469957,41470130-41470231
          Length = 432

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -1

Query: 484 LVLSIISQLNEIVLNYIARVS*KHSSXSMKLYQIVYSV*LMLKFARYQL 338
           L+++IISQ  E++ NYI   S  H++ +  +  ++    +ML   +Y L
Sbjct: 222 LIVTIISQAGEVLDNYIQAHSEVHNNETDLMKFMLARTTIMLSTMKYDL 270


>01_07_0142 +
           41433580-41433969,41434633-41434971,41436609-41436689,
           41437514-41437605,41437694-41437737,41437815-41437870,
           41438683-41438841,41438949-41438984,41439157-41439258
          Length = 432

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 15/49 (30%), Positives = 28/49 (57%)
 Frame = -1

Query: 484 LVLSIISQLNEIVLNYIARVS*KHSSXSMKLYQIVYSV*LMLKFARYQL 338
           L+++IISQ  E++ NYI   S  H++ +  +  ++    +ML   +Y L
Sbjct: 222 LIVTIISQAGEVLDNYIQAHSEVHNNETDLMKFMLARTTIMLSTMKYDL 270


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,958,767
Number of Sequences: 37544
Number of extensions: 158632
Number of successful extensions: 232
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 230
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 232
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1083123860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)