Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E21
         (508 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81557-9|CAE17850.1|  554|Caenorhabditis elegans Hypothetical pr...    29   1.9  
Z81034-1|CAB02726.1|  194|Caenorhabditis elegans Hypothetical pr...    27   7.8  

>Z81557-9|CAE17850.1|  554|Caenorhabditis elegans Hypothetical
           protein F59A1.15 protein.
          Length = 554

 Score = 29.1 bits (62), Expect = 1.9
 Identities = 18/51 (35%), Positives = 25/51 (49%)
 Frame = -1

Query: 310 FLDYFFIYLSFRF*FVTSG*LATSFKKENLLPNIHNGVPPVLLKVCLPSSI 158
           F+ YFFIY S RF       L  + K ++L    HNG        CLP+++
Sbjct: 82  FIVYFFIYFSSRF-------LTETQKLKSLETMKHNGTNEYFYSKCLPNNM 125


>Z81034-1|CAB02726.1|  194|Caenorhabditis elegans Hypothetical
           protein C15C6.1 protein.
          Length = 194

 Score = 27.1 bits (57), Expect = 7.8
 Identities = 9/27 (33%), Positives = 18/27 (66%), Gaps = 3/27 (11%)
 Frame = +2

Query: 86  MYNYLTCILMYN---ENLSCYYCDHLF 157
           MY +LTC +++N    ++  +Y +H+F
Sbjct: 144 MYTFLTCFMLFNAWQAHVGIHYIEHIF 170


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,626,263
Number of Sequences: 27780
Number of extensions: 170636
Number of successful extensions: 260
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 260
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 977860456
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)