Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E19
         (381 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC22F3.12c |rgs1||regulator of G-protein signaling Rgs1|Schizo...    25   5.3  
SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|c...    25   5.3  
SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|...    24   7.0  
SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    24   7.0  
SPBC119.07 |ppk19||serine/threonine protein kinase Ppk19|Schizos...    24   9.3  
SPCC132.01c ||SPCC1322.17c|DUF814 family protein|Schizosaccharom...    24   9.3  
SPBC1685.03 |sec11||signal peptidase subunit Sec11 |Schizosaccha...    24   9.3  

>SPAC22F3.12c |rgs1||regulator of G-protein signaling
           Rgs1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 10/41 (24%), Positives = 22/41 (53%)
 Frame = +2

Query: 80  TCSLKSLATTSNSMMISRSSGATPGCAGKRVLSLSTLTVPQ 202
           +C+L  L +T  ++ +S+ +     C  K + S +  T+P+
Sbjct: 78  SCTLLQLLSTLENLQLSQVNRIKSRCGSKVLKSTTKFTIPK 118


>SPCC757.12 |||alpha-amylase homolog |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 625

 Score = 24.6 bits (51), Expect = 5.3
 Identities = 10/33 (30%), Positives = 15/33 (45%)
 Frame = +1

Query: 271 LTNQMKLGAATAGLAYDNVHGTRSDSYKHSHPW 369
           L N M +   T  ++Y N+      SY H + W
Sbjct: 141 LANSMAIPGPTDNISYSNLVPFNDSSYFHPYCW 173


>SPCC736.07c |||cell polarity protein |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 699

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 15/48 (31%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
 Frame = +1

Query: 226 TGNENHKLSALGSVDLTNQMKLGAATAGLA-YDNVHGTRSDSYKHSHP 366
           T N N+K   +GS+  +N       T G++ + + HG  SDS  +  P
Sbjct: 152 TKNINYKAPEMGSLP-SNTEFTSTPTLGVSEFPSKHGDHSDSKTYESP 198


>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 24.2 bits (50), Expect = 7.0
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = -2

Query: 293 PNFIWLVRSTEPRALSLWFSLPVIGTLTIAPEVPSE 186
           PNF +L    EP A+ L F     G+   +  +PS+
Sbjct: 106 PNFYYLTGCLEPNAVLLMFKNGASGSYDCSLYLPSK 141


>SPBC119.07 |ppk19||serine/threonine protein kinase
            Ppk19|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1706

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = +1

Query: 145  NSRVRRQAGALTINSDGTSGAIVKVPITGNENH-KLSALGSVDLT 276
            NS V +  G+ + +S  T      +PI   ENH  L++ GS  ++
Sbjct: 1439 NSPVTKVPGSSSTSSSSTQPINSTIPINPLENHGMLNSFGSTTVS 1483


>SPCC132.01c ||SPCC1322.17c|DUF814 family
           protein|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1021

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 300 SGSQLHLVSEINGAKSTELV 241
           +GS +H+VSE  G K ++++
Sbjct: 759 TGSDIHIVSEKRGKKGSKVI 778


>SPBC1685.03 |sec11||signal peptidase subunit Sec11
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 189

 Score = 23.8 bits (49), Expect = 9.3
 Identities = 13/43 (30%), Positives = 23/43 (53%)
 Frame = -1

Query: 339 PCPMDIVVCQSSCSGSQLHLVSEINGAKSTELVVFVASYRYLD 211
           P P+   V +   S +Q HL+++ +  K  ++ +F  S  YLD
Sbjct: 99  PIPIVHRVVKLYESENQTHLITKGDNNKIDDVAMFPKSINYLD 141


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,587,057
Number of Sequences: 5004
Number of extensions: 29266
Number of successful extensions: 70
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 70
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 70
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 124270298
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)