Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_E19
(381 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0256 + 21331396-21332268 33 0.076
11_04_0090 - 13391028-13391117,13391369-13391502,13391532-133916... 31 0.31
07_03_1164 + 24451808-24451868,24452690-24452923,24453735-244537... 29 1.2
03_04_0112 - 17375871-17376099,17377021-17377054,17377237-173774... 29 1.2
01_01_1208 + 9733010-9733114,9733920-9733979,9735254-9736280,973... 29 1.2
08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,440... 28 2.9
02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715 28 2.9
07_03_0111 + 13535912-13535972,13536081-13536142,13536418-135365... 27 3.8
12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902 27 5.0
10_08_0779 - 20497718-20498773 27 5.0
03_02_0197 + 6337212-6337278,6339261-6340517,6340599-6340626,634... 27 5.0
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 27 5.0
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 27 6.6
>02_04_0256 + 21331396-21332268
Length = 290
Score = 33.1 bits (72), Expect = 0.076
Identities = 19/44 (43%), Positives = 25/44 (56%)
Frame = -1
Query: 180 SESTRLPAHPGVAPLLRLIIILFDVVARLFNEHVPAVDADQENR 49
S + RL AHPG P +RLI++ D +A LF A AD + R
Sbjct: 139 SRAQRLLAHPGRLPPVRLILV--DSIASLFRADFDASPADLKRR 180
>11_04_0090 -
13391028-13391117,13391369-13391502,13391532-13391659,
13391684-13391718,13391719-13392159
Length = 275
Score = 31.1 bits (67), Expect = 0.31
Identities = 12/23 (52%), Positives = 14/23 (60%)
Frame = -3
Query: 142 PTAPADHHTVRCSSQALQRARTG 74
PTAP HH++ CS RA TG
Sbjct: 44 PTAPPKHHSLSCSGSQAPRATTG 66
>07_03_1164 +
24451808-24451868,24452690-24452923,24453735-24453768,
24454372-24454627
Length = 194
Score = 29.1 bits (62), Expect = 1.2
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +2
Query: 11 ANIRRCSPSYSSCLFSWSASTAGTCSLKSLATTSNSM 121
A + PS S C F SAS AGT + ++ T+ +M
Sbjct: 91 ATLTTSDPSVSGCSFPASASGAGTSTTPTMGGTTGTM 127
>03_04_0112 -
17375871-17376099,17377021-17377054,17377237-17377470,
17377636-17377705
Length = 188
Score = 29.1 bits (62), Expect = 1.2
Identities = 18/51 (35%), Positives = 23/51 (45%)
Frame = +2
Query: 11 ANIRRCSPSYSSCLFSWSASTAGTCSLKSLATTSNSMMISRSSGATPGCAG 163
A + PS+S C F SAS AGT L S + + +S G G G
Sbjct: 94 ATLSSSDPSFSGCTFPSSASAAGTTGL-SPGVGTGTGTLSPGGGIGTGTNG 143
>01_01_1208 +
9733010-9733114,9733920-9733979,9735254-9736280,
9736332-9736621
Length = 493
Score = 29.1 bits (62), Expect = 1.2
Identities = 21/64 (32%), Positives = 28/64 (43%), Gaps = 1/64 (1%)
Frame = -2
Query: 341 LRVPWTLSYANPAVAAPNFIWLVRSTEPRALSLWFSL-PVIGTLTIAPEVPSELIVRAPA 165
L VP TL +PA AA + IW +P ++ S P + APE P L A
Sbjct: 423 LWVPKTLRIDDPAEAAKSSIWATLGIKPDDKGIFKSFQPNVAKNGTAPESPQALQANPAA 482
Query: 164 CRRT 153
R+
Sbjct: 483 FSRS 486
>08_01_0004 + 39265-39440,39545-39652,41955-43528,43650-43996,
44090-44322,45308-45412,45531-45705,46443-46658
Length = 977
Score = 27.9 bits (59), Expect = 2.9
Identities = 17/54 (31%), Positives = 28/54 (51%)
Frame = +1
Query: 58 LVGVNSRYVLVEEPGYYIEQYDDQPEQWGNSRVRRQAGALTINSDGTSGAIVKV 219
L G+ SR V P + ++ Y D+ EQW R R + L I+ + + G+ +V
Sbjct: 886 LTGLGSRIV---SPVFGLQSYSDKGEQWFQLR-RPDSKQLQIDGESSKGSRAEV 935
>02_05_0707 + 31096628-31096630,31097037-31097405,31097477-31101715
Length = 1536
Score = 27.9 bits (59), Expect = 2.9
Identities = 15/41 (36%), Positives = 22/41 (53%)
Frame = +2
Query: 44 SCLFSWSASTAGTCSLKSLATTSNSMMISRSSGATPGCAGK 166
SC S S + + +CS + T +S +RSS A G AG+
Sbjct: 480 SCSSSQSLNNSQSCSSEHAKTIGSSKEDARSSTAASGIAGR 520
>07_03_0111 + 13535912-13535972,13536081-13536142,13536418-13536510,
13537577-13537649,13537876-13538265,13538337-13538404,
13539334-13539375,13540211-13540735,13540817-13540974,
13541078-13541636,13542438-13542500,13542579-13542680,
13542779-13543096,13543175-13543267,13543489-13543590,
13543678-13543782,13544190-13544323,13545097-13545280,
13545701-13545832,13546215-13546327,13546468-13546558,
13547138-13549339
Length = 1889
Score = 27.5 bits (58), Expect = 3.8
Identities = 12/33 (36%), Positives = 17/33 (51%)
Frame = +1
Query: 268 DLTNQMKLGAATAGLAYDNVHGTRSDSYKHSHP 366
D + + G A + +AY VH T S +K S P
Sbjct: 1349 DASAEQMSGKAESQMAYSQVHSTTSVDHKESEP 1381
>12_02_1059 - 25744184-25745334,25745595-25746262,25747376-25747902
Length = 781
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/33 (42%), Positives = 21/33 (63%), Gaps = 1/33 (3%)
Frame = -1
Query: 195 TVRVDSEST-RLPAHPGVAPLLRLIIILFDVVA 100
T+R+D+ S + A P +AP L +I+ L VVA
Sbjct: 167 TLRIDNRSEPKFKASPAMAPRLVIILFLLAVVA 199
>10_08_0779 - 20497718-20498773
Length = 351
Score = 27.1 bits (57), Expect = 5.0
Identities = 14/46 (30%), Positives = 24/46 (52%)
Frame = +2
Query: 53 FSWSASTAGTCSLKSLATTSNSMMISRSSGATPGCAGKRVLSLSTL 190
++W S A TC L L+ S++++ S G + R+L L+ L
Sbjct: 106 WAWPPSLASTCGLARLSRDDASLLLNGSWVMVAGDSQARLLVLALL 151
>03_02_0197 +
6337212-6337278,6339261-6340517,6340599-6340626,
6340735-6340897
Length = 504
Score = 27.1 bits (57), Expect = 5.0
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 2/38 (5%)
Frame = +2
Query: 11 ANIRRCSPSYSSCLFSWSASTAGTCSLK--SLATTSNS 118
A I PS+ SC+++ S GT L SLA +SNS
Sbjct: 434 AVITTTDPSHGSCVYAGSGGKNGTSLLNGTSLAPSSNS 471
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 27.1 bits (57), Expect = 5.0
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 215 LTIAPEV-PSELIVRAPACRRTLELPHC 135
+ IA +V P EL+V PA R +E+P+C
Sbjct: 132 VVIAHDVDPIELVVWLPALCRKMEIPYC 159
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 26.6 bits (56), Expect = 6.6
Identities = 13/28 (46%), Positives = 19/28 (67%), Gaps = 1/28 (3%)
Frame = -2
Query: 215 LTIAPEV-PSELIVRAPACRRTLELPHC 135
+ IA +V P EL+V PA R +E+P+C
Sbjct: 147 VVIAHDVDPIELVVWLPALCRKMEVPYC 174
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,942,262
Number of Sequences: 37544
Number of extensions: 214816
Number of successful extensions: 714
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 703
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 714
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 624784784
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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