Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E15
         (553 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC776.10c |cog6||Golgi transport complex peripheral subunit Co...    26   3.2  
SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2 |Schizosac...    26   4.2  
SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr...    25   5.6  
SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomy...    25   7.4  
SPCC18B5.03 |wee1||dual specificity protein kinase Wee1|Schizosa...    25   7.4  
SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter |Schiz...    25   9.8  
SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual      25   9.8  

>SPBC776.10c |cog6||Golgi transport complex peripheral subunit Cog6
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 675

 Score = 26.2 bits (55), Expect = 3.2
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = -1

Query: 214 INIHSSLPKVQVNYRIV*KNWSEKSNISQVLQNAF 110
           +++ S L KV+ +       WS+K+N +Q+L N++
Sbjct: 90  LSVQSQLLKVKNSIDSYKNEWSKKTNDAQILLNSY 124


>SPAC16A10.06c |nse2||Smc5-6 complex non-SMC subunit 2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 250

 Score = 25.8 bits (54), Expect = 4.2
 Identities = 16/40 (40%), Positives = 19/40 (47%), Gaps = 3/40 (7%)
 Frame = +3

Query: 330 LRAYCDHFYSKSALLS---RTASCVVKFRHRHLRSSQLSE 440
           L   C+HFY K A+LS    T  C V      L+ S L E
Sbjct: 191 LSTACNHFYEKDAILSLLNPTCVCPVVGCEARLQRSLLKE 230


>SPBC215.07c |||PWWP domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 568

 Score = 25.4 bits (53), Expect = 5.6
 Identities = 6/22 (27%), Positives = 14/22 (63%)
 Frame = -1

Query: 331 NDDPTRSLCGETITESWRKIFK 266
           N+D  +S+CG+ +   W+ + +
Sbjct: 416 NEDEVKSICGDILENRWKSLLQ 437


>SPBC16E9.11c |pub3||ubiquitin-protein ligase E3|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 786

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 14/36 (38%), Positives = 18/36 (50%), Gaps = 2/36 (5%)
 Frame = -2

Query: 414 DGAGISPHSW--RSGTTTRFYYKNGRSRLATTTRPA 313
           D  G  P  W  R+ +  R YY +  +R  T TRPA
Sbjct: 233 DQYGRLPPGWERRADSLGRTYYVDHNTRTTTWTRPA 268


>SPCC18B5.03 |wee1||dual specificity protein kinase
           Wee1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 877

 Score = 25.0 bits (52), Expect = 7.4
 Identities = 15/33 (45%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
 Frame = -3

Query: 422 SQVTVPEFHHTAGGPGQQRAFTI-KMVAVGSQR 327
           +QV  P  HHTA  P   RAF I K  + G +R
Sbjct: 129 AQVANP-IHHTAPSPSDVRAFPIHKNASTGVKR 160


>SPAC328.09 |||2-oxoadipate and 2-oxoglutarate transporter
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 298

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = -1

Query: 301 ETITESWRKIFKLKDGN 251
           +T ++ WRK+FK KD +
Sbjct: 87  DTYSKLWRKVFKRKDSS 103


>SPBC1685.06 |cid11||poly|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 478

 Score = 24.6 bits (51), Expect = 9.8
 Identities = 10/29 (34%), Positives = 14/29 (48%)
 Frame = -1

Query: 334 RNDDPTRSLCGETITESWRKIFKLKDGNE 248
           RND    ++  E   E W+   +LK  NE
Sbjct: 35  RNDQINETVDAELTNECWKLYMRLKPSNE 63


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,104,490
Number of Sequences: 5004
Number of extensions: 41711
Number of successful extensions: 85
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 229961028
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)