Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E15
         (553 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_02_0314 - 14190245-14191006                                         29   3.3  
02_01_0775 + 5775949-5777385                                           28   4.3  
06_01_0575 + 4062084-4063135,4063518-4063620                           28   5.7  
11_06_0228 + 21497248-21498143,21499831-21501700,21501934-215020...    27   7.5  
07_03_0028 + 12611734-12612522                                         27   10.0 

>06_02_0314 - 14190245-14191006
          Length = 253

 Score = 28.7 bits (61), Expect = 3.3
 Identities = 14/30 (46%), Positives = 19/30 (63%)
 Frame = +2

Query: 254 AILKFKNLSPTFSNGFATQRAGRVVVASLL 343
           A+L F+ LSP F+NG   Q   RV+ A L+
Sbjct: 99  AVLVFEVLSPVFTNGGKCQDVNRVMTAWLV 128


>02_01_0775 + 5775949-5777385
          Length = 478

 Score = 28.3 bits (60), Expect = 4.3
 Identities = 17/45 (37%), Positives = 19/45 (42%)
 Frame = -2

Query: 423 FSSDGAGISPHSWRSGTTTRFYYKNGRSRLATTTRPARCVAKPLL 289
           F+SDG     HS   G   R  +     RLA   RPA CV    L
Sbjct: 84  FASDGEAAWRHSETFGRVGREAFAGVVDRLAARGRPATCVVYAFL 128


>06_01_0575 + 4062084-4063135,4063518-4063620
          Length = 384

 Score = 27.9 bits (59), Expect = 5.7
 Identities = 17/57 (29%), Positives = 26/57 (45%)
 Frame = -2

Query: 471 GMTSRRQ*AKLQRVDYFSSDGAGISPHSWRSGTTTRFYYKNGRSRLATTTRPARCVA 301
           GM + RQ +   R  +    G G +  SW S  + R  ++ G  R  + + PA  VA
Sbjct: 252 GMLALRQ-SSFNRKHHHHGGGGGAAAESWCSSDSDRRGWRRGPFRSGSDSSPAVSVA 307


>11_06_0228 +
           21497248-21498143,21499831-21501700,21501934-21502038,
           21502139-21502232,21502335-21502363
          Length = 997

 Score = 27.5 bits (58), Expect = 7.5
 Identities = 12/47 (25%), Positives = 25/47 (53%)
 Frame = -1

Query: 259 DGNEPSVYLKYLLFLINIHSSLPKVQVNYRIV*KNWSEKSNISQVLQ 119
           DG EP+    +   +   H SL K+++ ++I  +    KS + +V++
Sbjct: 114 DGLEPAKKHNFTWLIDKCHESLSKIKIRHKIANEIKDIKSQVKEVME 160


>07_03_0028 + 12611734-12612522
          Length = 262

 Score = 27.1 bits (57), Expect = 10.0
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +2

Query: 257 ILKFKNLSPTFSNGFATQRAGRVVVASLL 343
           +L F++LSP+F+N  A   + R + A+LL
Sbjct: 94  VLAFQSLSPSFTNRGACLTSNRYLTAALL 122


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,548,529
Number of Sequences: 37544
Number of extensions: 242756
Number of successful extensions: 468
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 464
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 468
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1245816180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)