Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E14
         (519 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0076 + 22558105-22558261,22558356-22558405,22559837-225600...    29   2.2  
06_01_0887 + 6803937-6804030,6804101-6804204                           28   3.9  
12_01_0500 + 3966456-3968556,3968640-3969087,3969524-3969718,396...    28   5.2  
06_03_0726 + 23904350-23904964,23905986-23906021,23906158-239062...    28   5.2  
03_06_0078 + 31505126-31507933                                         27   6.8  
03_01_0336 - 2659349-2659486,2659607-2659758,2660257-2660365,266...    27   6.8  
03_03_0186 + 15243150-15243563,15243685-15243777,15244604-152446...    27   9.0  

>04_04_0076 +
           22558105-22558261,22558356-22558405,22559837-22560044,
           22560112-22560237,22560469-22560567,22560729-22561405,
           22561483-22561731,22561808-22561936,22562021-22562089,
           22562183-22562256,22563086-22563098,22563361-22563468,
           22563541-22563651,22563725-22563811,22564043-22564068,
           22564840-22564906,22565123-22565212,22565295-22565387,
           22565515-22565604,22565699-22565761,22566349-22566447
          Length = 894

 Score = 29.1 bits (62), Expect = 2.2
 Identities = 37/156 (23%), Positives = 66/156 (42%), Gaps = 3/156 (1%)
 Frame = +1

Query: 46  DEKL-VNNEIQDLEIEMTTYRIQYNTTLECDNIVYFPLSVRDNKFPLGLKNYTFIDESHN 222
           ++KL V   +   E ++T  + QY+  LE   I      +  +   L LKN    D++ N
Sbjct: 518 EQKLQVQASLAATESQLTEAKKQYDIMLEGKKI-----ELSKHLKELSLKN----DQAIN 568

Query: 223 ELLSSHYAIENQNIVDVENESRMRIILRLNKPQKDLVSFGIWGRLFSRDVDHNKHITEED 402
           E+    Y +E   I+++E E   ++I  +     + +S        S ++        E 
Sbjct: 569 EIRRK-YELEKVEIINIEKEKAEKLIKEMENKCNEKISENRQDSESSFEMVARIQQDNEH 627

Query: 403 KQKFVDILNI--IYGNDGAADGGEREKLSSLASDHE 504
           K+  +   +   +      A+   RE+LSSL  DHE
Sbjct: 628 KESTLRAYHKEELQRIQSQAENELRERLSSLRKDHE 663


>06_01_0887 + 6803937-6804030,6804101-6804204
          Length = 65

 Score = 28.3 bits (60), Expect = 3.9
 Identities = 15/55 (27%), Positives = 24/55 (43%)
 Frame = +1

Query: 64  NEIQDLEIEMTTYRIQYNTTLECDNIVYFPLSVRDNKFPLGLKNYTFIDESHNEL 228
           N +Q+L    T +       L C        S+R+ KF  G + +TF    H+E+
Sbjct: 7   NRVQELPDNDTEWEAAVAVKLMCSGYKELASSLRNKKFCKGARVHTFSPPRHHEV 61


>12_01_0500 +
           3966456-3968556,3968640-3969087,3969524-3969718,
           3969891-3970119
          Length = 990

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 10/37 (27%), Positives = 20/37 (54%)
 Frame = +1

Query: 388 ITEEDKQKFVDILNIIYGNDGAADGGEREKLSSLASD 498
           + +ED    +D+ + + G  G  DGG+  + +  A+D
Sbjct: 68  VVKEDDASSIDVTDGVKGRGGGGDGGDTPRTTDEAAD 104


>06_03_0726 +
           23904350-23904964,23905986-23906021,23906158-23906256,
           23906445-23906627,23907016-23907105,23907187-23907285,
           23907584-23907688,23907786-23907926,23908009-23908296,
           23908536-23908826
          Length = 648

 Score = 27.9 bits (59), Expect = 5.2
 Identities = 14/40 (35%), Positives = 22/40 (55%)
 Frame = +1

Query: 379 NKHITEEDKQKFVDILNIIYGNDGAADGGEREKLSSLASD 498
           ++ +TEE +Q F D L+ +   D ++  GER   SS   D
Sbjct: 465 SRRLTEEAEQYFEDFLSNVEDTDFSSFDGERSDTSSSRRD 504


>03_06_0078 + 31505126-31507933
          Length = 935

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 12/29 (41%), Positives = 17/29 (58%)
 Frame = +1

Query: 316 PQKDLVSFGIWGRLFSRDVDHNKHITEED 402
           P   +VSF    R  S++++H K  TEED
Sbjct: 561 PDNHVVSFDAAVRSVSQELEHGKDFTEED 589


>03_01_0336 -
           2659349-2659486,2659607-2659758,2660257-2660365,
           2660459-2660563,2660874-2660957,2661072-2662745
          Length = 753

 Score = 27.5 bits (58), Expect = 6.8
 Identities = 14/42 (33%), Positives = 24/42 (57%), Gaps = 4/42 (9%)
 Frame = +1

Query: 361 SRDVDHNK----HITEEDKQKFVDILNIIYGNDGAADGGERE 474
           SR VD +     H+  + + K V+I NI++   G +D G+R+
Sbjct: 68  SRSVDRSHETEVHVFNDKQDKAVEIKNILHDGVGQSDYGQRQ 109


>03_03_0186 + 15243150-15243563,15243685-15243777,15244604-15244666,
            15245028-15245114,15245197-15245349,15245422-15245579,
            15246458-15246692,15246782-15246892,15246942-15246968,
            15247269-15248327,15248432-15248692,15249011-15249196,
            15249642-15250793,15250886-15251236,15251343-15251738
          Length = 1581

 Score = 27.1 bits (57), Expect = 9.0
 Identities = 12/29 (41%), Positives = 16/29 (55%)
 Frame = +1

Query: 4    ACKDNEFKSCGYRYDEKLVNNEIQDLEIE 90
            A K  +F   G++YD  L+    Q LEIE
Sbjct: 1121 ALKRRDFLQLGFKYDNLLMEESAQILEIE 1149


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,546,268
Number of Sequences: 37544
Number of extensions: 208045
Number of successful extensions: 537
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 531
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 537
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1130733700
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)