Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E14
         (519 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z75954-7|CAB00106.2|  492|Caenorhabditis elegans Hypothetical pr...    33   0.093
AF106575-5|AAC78171.1|  421|Caenorhabditis elegans Hypothetical ...    32   0.21 
Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical pr...    28   4.6  
U49941-1|AAB53872.1|  609|Caenorhabditis elegans Hypothetical pr...    28   4.6  
AF273797-1|AAG15145.1|  323|Caenorhabditis elegans nuclear recep...    28   4.6  
AC024826-12|AAF60792.1|  323|Caenorhabditis elegans Hypothetical...    28   4.6  
AL021472-3|CAA16300.1|  259|Caenorhabditis elegans Hypothetical ...    27   8.0  

>Z75954-7|CAB00106.2|  492|Caenorhabditis elegans Hypothetical
           protein F58H1.3a protein.
          Length = 492

 Score = 33.5 bits (73), Expect = 0.093
 Identities = 21/83 (25%), Positives = 44/83 (53%), Gaps = 2/83 (2%)
 Frame = +1

Query: 91  MTTYRIQYNTTL-ECDNIVYFPLSVRDNKFPLGLKNYTFIDESHNELLSSHYAIEN-QNI 264
           MTT  IQ+N  L + +  +     V+D  FP   +N     E H +  ++   +E+ ++I
Sbjct: 1   MTTTTIQFNALLLDIEGTITSISFVKDELFPYAFENVGNYLEEHYDNPATQIIVEDLRHI 60

Query: 265 VDVENESRMRIILRLNKPQKDLV 333
            D + E+ + ++ R+ +P+K+ +
Sbjct: 61  ADQQAENDVAVV-RIREPRKECI 82


>AF106575-5|AAC78171.1|  421|Caenorhabditis elegans Hypothetical
           protein K04F1.12 protein.
          Length = 421

 Score = 32.3 bits (70), Expect = 0.21
 Identities = 12/27 (44%), Positives = 18/27 (66%)
 Frame = +1

Query: 121 TLECDNIVYFPLSVRDNKFPLGLKNYT 201
           T+ECDNI +F +S+ D    +G+ N T
Sbjct: 150 TIECDNIGFFKISLNDKMTEIGMPNLT 176


>Z83233-1|CAB05760.3|  371|Caenorhabditis elegans Hypothetical
           protein K06B4.1 protein.
          Length = 371

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +1

Query: 166 DNKFPLGLKNYTFIDESHNELLSSHYAIENQNIVDVENESRMRIILRLNKPQKDLVSFGI 345
           D K    L N + +DE  +  + + Y+IE+ ++ DV  +S +  I+R  KP    V+   
Sbjct: 85  DLKIQRMLMNLSEMDEQRHWRMLNSYSIEDPSLGDVLVDSNVMKIMR--KPSNQKVTAHE 142

Query: 346 WGRL--FSRDVDHNKHITEEDKQKFVD 420
           W  L  +SR + H  +    +   F D
Sbjct: 143 WAFLDVYSR-ISHFSNFEFMNNISFAD 168


>U49941-1|AAB53872.1|  609|Caenorhabditis elegans Hypothetical
           protein K10B3.5 protein.
          Length = 609

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 12/32 (37%), Positives = 21/32 (65%), Gaps = 1/32 (3%)
 Frame = +1

Query: 379 NKHITEEDKQKFVDIL-NIIYGNDGAADGGER 471
           NKH+  E +++ V +L N I+GN   +D G++
Sbjct: 367 NKHLVTEHRKETVPLLDNAIFGNGALSDYGKK 398


>AF273797-1|AAG15145.1|  323|Caenorhabditis elegans nuclear receptor
           NHR-51 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 24/87 (27%), Positives = 41/87 (47%), Gaps = 2/87 (2%)
 Frame = +1

Query: 166 DNKFPLGLKNYTFIDESHNELLSSHYAIENQNIVDVENESRMRIILRLNKPQKDLVSFGI 345
           D K    L N + +DE  +  + + Y+IE+ ++ DV  +S +  I+R  KP    V+   
Sbjct: 37  DLKIQRMLMNLSEMDEQRHWRMLNSYSIEDPSLGDVLVDSNVMKIMR--KPSNQKVTAHE 94

Query: 346 WGRL--FSRDVDHNKHITEEDKQKFVD 420
           W  L  +SR + H  +    +   F D
Sbjct: 95  WAFLDVYSR-ISHFSNFEFMNNISFAD 120


>AC024826-12|AAF60792.1|  323|Caenorhabditis elegans Hypothetical
           protein Y55F3AM.11 protein.
          Length = 323

 Score = 27.9 bits (59), Expect = 4.6
 Identities = 17/34 (50%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
 Frame = +1

Query: 379 NKHIT-EEDKQKFVDILNIIYGNDGAADGGEREK 477
           N  IT EE+ QK  D  NI+YG D AAD  +R +
Sbjct: 160 NNWITFEEEWQKLTDNRNILYGFD-AADQNDRTR 192


>AL021472-3|CAA16300.1|  259|Caenorhabditis elegans Hypothetical
           protein Y17D7B.3 protein.
          Length = 259

 Score = 27.1 bits (57), Expect = 8.0
 Identities = 16/48 (33%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
 Frame = -3

Query: 373 PRLSKIVCPKYQMILNPFVVYSVLK*SAYDF-RFLRQRYSGFR*RNVN 233
           P  S+++ P     L PF++YS+ K   ++   FL Q + GF  +N+N
Sbjct: 35  PETSQLLKPLLDTDLLPFLLYSLNKQKRWEISNFLDQNFLGFL-KNLN 81


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,705,839
Number of Sequences: 27780
Number of extensions: 210717
Number of successful extensions: 572
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 560
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 572
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1007108110
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)