Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_E13
(619 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c... 27 1.6
SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 27 1.6
SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyce... 27 2.9
SPAC926.09c |fas1||fatty acid synthase beta subunit Fas1|Schizos... 27 2.9
SPBC1604.16c |||RNA-binding protein, G-patch type |Schizosacchar... 26 5.0
SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces p... 25 6.6
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 25 6.6
SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|ch... 25 6.6
SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces ... 25 8.8
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 8.8
SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3 sub... 25 8.8
>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
2|||Manual
Length = 279
Score = 27.5 bits (58), Expect = 1.6
Identities = 14/46 (30%), Positives = 22/46 (47%)
Frame = +2
Query: 434 DDPNSARIANTYIENSGGGRVSNVLRSDDFFESRMILTNVISFKGL 571
+D + R N I++S G + + DDF E + + SFK L
Sbjct: 138 NDDTTTRSNNQVIQSSCGNNLQRIEEPDDFVECPVCYAPLSSFKTL 183
>SPAPB24D3.07c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 300
Score = 27.5 bits (58), Expect = 1.6
Identities = 11/37 (29%), Positives = 21/37 (56%)
Frame = +2
Query: 167 IWTLMTGIALGASGESYRQLSTAFILPKKQNTLIDGY 277
+WTL+ ++LG+ +Y ++ +P NTL+ Y
Sbjct: 5 VWTLLGALSLGSLTTAYGANASNSSVPTPDNTLVVSY 41
>SPAC3H5.08c |||WD repeat protein Wdr44 family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 855
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/34 (41%), Positives = 20/34 (58%)
Frame = +2
Query: 413 SXKVLDFDDPNSARIANTYIENSGGGRVSNVLRS 514
S K L F +P+ A +NT++ G R SNV R+
Sbjct: 6 SEKTLSFLNPSRAS-SNTHLSREGTNRSSNVTRT 38
>SPAC926.09c |fas1||fatty acid synthase beta subunit
Fas1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 2073
Score = 26.6 bits (56), Expect = 2.9
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 4/40 (10%)
Frame = +1
Query: 220 ATQHSFHITEEAKHTYRRLQETH----KRRFGSGDECSVP 327
A +HS + E AK + ETH ++F +GDE +P
Sbjct: 1061 AAKHSTKVNEPAKELLDGINETHIQHFIKKFYAGDEKKIP 1100
>SPBC1604.16c |||RNA-binding protein, G-patch type
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 199
Score = 25.8 bits (54), Expect = 5.0
Identities = 12/36 (33%), Positives = 18/36 (50%)
Frame = -3
Query: 536 FSIRRNRPNGAHSKRDRRQNSLYTCSRYVPNSDRRN 429
F R+ + +SKRD + C Y+PNS + N
Sbjct: 52 FENDRDNSHTMNSKRDEAGFACEVCQIYIPNSKKIN 87
>SPBC23E6.02 |||ATP-dependent DNA helicase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1040
Score = 25.4 bits (53), Expect = 6.6
Identities = 19/52 (36%), Positives = 26/52 (50%)
Frame = +2
Query: 176 LMTGIALGASGESYRQLSTAFILPKKQNTLIDGYKKLTNVVLDPATSAVSLT 331
L + I A + +R L A +L + +NT IDG LT L P T+ S T
Sbjct: 604 LSSNINTSAPMKRFRGLLKAVLLRRTKNTKIDGKPILT---LPPKTAVKSET 652
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 25.4 bits (53), Expect = 6.6
Identities = 14/48 (29%), Positives = 23/48 (47%)
Frame = -2
Query: 531 DSKKSSERSTFETRPPPEFSIYVFAIRAEFGSSKSNTXIDAPKSLCSV 388
+S + S ST PPP + A+ EF + K++ P+S +V
Sbjct: 260 ESPRRSVSSTPPVHPPPPVPQNLSAVNEEFDTKKNDFDSKLPESTPAV 307
>SPBC17D11.02c |||synoviolin homolog|Schizosaccharomyces pombe|chr
2|||Manual
Length = 677
Score = 25.4 bits (53), Expect = 6.6
Identities = 10/18 (55%), Positives = 13/18 (72%)
Frame = +1
Query: 190 SFRSERRKLQATQHSFHI 243
SFR+ER ++Q T FHI
Sbjct: 120 SFRTERLQIQLTDQRFHI 137
>SPAC19G12.03 |cda1||chitin deacetylase Cda1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 320
Score = 25.0 bits (52), Expect = 8.8
Identities = 14/53 (26%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Frame = +2
Query: 407 GASXKVLDFDD-PNSARIANTYIENSGGGRVSNVLRSDDFFESRMILTNVISF 562
G + K +D + PN+++IA +++ N G ++L D+ FE+ + ++ F
Sbjct: 9 GNAGKPVDTNPWPNNSKIAVSFVVNYEEGGERSLLYEDEGFETFLTEAGLMPF 61
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/39 (23%), Positives = 16/39 (41%)
Frame = +1
Query: 148 GIITLWNMDSDDRHSFRSERRKLQATQHSFHITEEAKHT 264
GII +W +E+ + FH+ + +HT
Sbjct: 2460 GIIRIWEKRLQSNAKLEAEKNNADRPKWRFHLLRQLQHT 2498
>SPAC17A5.06 |ptr8||transcription factor TFIIH complex ERCC-3
subunit|Schizosaccharomyces pombe|chr 1|||Manual
Length = 804
Score = 25.0 bits (52), Expect = 8.8
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 221 ACNFRRSLLKLCRSSESIFQ 162
AC ++S++ LC SS S+ Q
Sbjct: 362 ACTIKKSVIVLCTSSVSVMQ 381
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,599,909
Number of Sequences: 5004
Number of extensions: 54478
Number of successful extensions: 157
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 152
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 271646730
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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