Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_E13
(619 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0619 + 26652923-26653267,26653440-26654273 50 1e-06
01_01_1152 + 9170628-9171899 47 1e-05
11_01_0767 + 6438648-6438809,6439146-6440000 41 0.001
11_02_0011 - 7337618-7338496,7338596-7338991 39 0.004
11_01_0771 + 6453130-6454488 36 0.034
07_03_0605 + 19908541-19909605,19909703-19910092 33 0.24
11_04_0016 + 12280846-12280946,12281306-12281326,12281364-122813... 31 0.97
11_02_0012 - 7346282-7347136,7347234-7347593 31 0.97
11_02_0014 - 7352619-7352918,7353173-7353418 29 3.0
09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223 29 3.0
09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037 29 3.0
09_04_0388 + 17234485-17234583,17234710-17234893,17235252-172360... 29 3.0
10_08_0291 + 16556823-16557167,16557255-16557497,16557568-16558131 28 5.2
10_02_0058 - 4695400-4695648,4695846-4696112,4706026-4706430 28 5.2
06_03_0696 + 23617687-23617851,23618838-23619536 28 6.8
08_02_1572 - 27952418-27952727,27952872-27953133,27954018-279541... 27 9.0
>04_04_0619 + 26652923-26653267,26653440-26654273
Length = 392
Score = 50.0 bits (114), Expect = 1e-06
Identities = 40/154 (25%), Positives = 70/154 (45%), Gaps = 3/154 (1%)
Frame = +2
Query: 149 VLSPFGIWTLMTGIALGASGESYRQLSTAFILPKKQNTLIDGYKKLTNVVLDPATSAVSL 328
+ SP G+ + +A G GE+ RQL AF+ + + L + +L + L
Sbjct: 23 MFSPLGLRAGLALLATGTDGETLRQL-LAFLGSQHIHQL----NAASAGLLAEMRAWPQL 77
Query: 329 TSRNYVFLDNDFVVYQDFRNTLQRDFGASXKVLDFDDPNSARIA--NTYIENSGGGRVSN 502
+ +F+D + +F++T GA + +DF + +A A N +I + GR++N
Sbjct: 78 SFAAGIFVDRSLRLRPEFQSTAAAAHGAFPRSVDFQNQANAAAAEVNRFISQATNGRLNN 137
Query: 503 VLRSDDFFES-RMILTNVISFKGLWSFPFNKSDT 601
+ F S + +L N + FK W F DT
Sbjct: 138 TISPGTFGSSTKCVLANAMHFKATWGRKFESYDT 171
>01_01_1152 + 9170628-9171899
Length = 423
Score = 47.2 bits (107), Expect = 1e-05
Identities = 38/158 (24%), Positives = 71/158 (44%), Gaps = 3/158 (1%)
Frame = +2
Query: 137 GGHVVLSPFGIWTLMTGIALGASGESYRQLSTAFILPKKQNTLIDGYKKLTNVVLDPATS 316
G + ++SP + +A GA GE+ R+L P +L + ++ T ++
Sbjct: 58 GRNFIVSPLSFHAALALVADGARGETQRELLGFLGSP----SLAELHRSPTTRLVARLRH 113
Query: 317 AVSLTSRNYVFLDNDFVVYQDFRNTLQRDFGASXKVLDF-DDPNSARI-ANTYIENSGGG 490
+ + V++D + +F + + A + DF P AR N ++ ++ G
Sbjct: 114 LPNTSFACGVWVDRGRALTPEFADAAASRYAAVAEPADFATQPEQARERVNAFVSDATEG 173
Query: 491 RVSNVLRSDDFFESRMI-LTNVISFKGLWSFPFNKSDT 601
+ +VL + S ++ L N + FKG WS PF+ S T
Sbjct: 174 LIRDVLPPNSVDSSTVVVLANAVHFKGTWSLPFHPSAT 211
>11_01_0767 + 6438648-6438809,6439146-6440000
Length = 338
Score = 40.7 bits (91), Expect = 0.001
Identities = 24/91 (26%), Positives = 47/91 (51%), Gaps = 3/91 (3%)
Frame = +2
Query: 347 FLDNDFVVYQDFRNTLQRDFGASXKVLDFDD-PNSARIA-NTYIENSGGGRVSNVLRSDD 520
+LD + + +R+ + + + +DF + P AR N ++ + ++ V++ +
Sbjct: 23 WLDASYSLKPAYRDAIVGTYKGAASTVDFKNHPVEARKEINAWVARATKNLITEVIKPES 82
Query: 521 -FFESRMILTNVISFKGLWSFPFNKSDTGIR 610
++R ++ N I FKG W PF+KSDT R
Sbjct: 83 QSVDTRHVVGNAIYFKGEWLAPFDKSDTAER 113
>11_02_0011 - 7337618-7338496,7338596-7338991
Length = 424
Score = 38.7 bits (86), Expect = 0.004
Identities = 33/158 (20%), Positives = 67/158 (42%), Gaps = 5/158 (3%)
Frame = +2
Query: 143 HVVLSPFGIWTLMTGIALGASGESYRQLSTAFILPKKQNTLIDGYKKLTNVVL--DPATS 316
++V SP ++ + +A GA G + +L A + + L + ++ V L + A+
Sbjct: 32 NLVFSPASLYAALALVAAGARGTTLDEL-LALLGAASLDDLEESVRRAVEVGLADESASG 90
Query: 317 AVSLTSRNYVFLDNDFVVYQDFRNTLQRDFGASXKVLDFD--DPNSARIANTYIENSGGG 490
++ V+ D + +R + A + +F S + N ++ +
Sbjct: 91 GPRVSDACGVWHDETLELKPAYRAAAAGTYKAVTRAANFQRQPKRSRKKINKWVSKATNK 150
Query: 491 RVSNVLRSDDFF-ESRMILTNVISFKGLWSFPFNKSDT 601
+ +L ++ ++L N I FKG WS PF +S T
Sbjct: 151 LIPEILPDGSVHVDTALVLVNAIYFKGKWSNPFPRSST 188
>11_01_0771 + 6453130-6454488
Length = 452
Score = 35.5 bits (78), Expect = 0.034
Identities = 18/48 (37%), Positives = 27/48 (56%), Gaps = 1/48 (2%)
Frame = +2
Query: 461 NTYIENSGGGRVSNVLRSDDFF-ESRMILTNVISFKGLWSFPFNKSDT 601
N + + G +++VL E+ ++L N I FKG W PFN+SDT
Sbjct: 178 NAWARRATGKLITDVLPPRSVGPETAVVLGNAIYFKGKWDRPFNESDT 225
>07_03_0605 + 19908541-19909605,19909703-19910092
Length = 484
Score = 32.7 bits (71), Expect = 0.24
Identities = 16/39 (41%), Positives = 22/39 (56%), Gaps = 1/39 (2%)
Frame = +2
Query: 464 TYIENSGGGRVSNVLRSDDFFESRMILTNVISF-KGLWS 577
T N GGG + DDF E R+ L+ +++F GLWS
Sbjct: 333 TLTNNDGGGGDDDDDEGDDFSEKRLTLSGLLNFIDGLWS 371
>11_04_0016 +
12280846-12280946,12281306-12281326,12281364-12281370,
12282062-12282178,12282305-12282352,12282411-12282415,
12282432-12282456,12283119-12283307
Length = 170
Score = 30.7 bits (66), Expect = 0.97
Identities = 11/27 (40%), Positives = 19/27 (70%)
Frame = +1
Query: 139 WSRGIITLWNMDSDDRHSFRSERRKLQ 219
W+ GI N+D+D+RH F++ R ++Q
Sbjct: 19 WTAGIRAQGNVDADERHQFKNGRDQVQ 45
>11_02_0012 - 7346282-7347136,7347234-7347593
Length = 404
Score = 30.7 bits (66), Expect = 0.97
Identities = 39/156 (25%), Positives = 67/156 (42%), Gaps = 3/156 (1%)
Frame = +2
Query: 143 HVVLSPFGIWTLMTGIALGASGESYRQLSTAFILPKKQNTLIDGYKKLTNVVLDPATSAV 322
+VV SP ++ + +A GA G + +L A + + L + ++ V L A +
Sbjct: 32 NVVFSPVSLYAALALVASGARGTTLDEL-VALLGAASLDDLEESVRRAVEVGL--ADESE 88
Query: 323 SLTSRNYVFLDNDFVVYQDFRNTLQRDFGASXKVLDFD-DPNSARIA-NTYIENSGGGRV 496
S R + V+ D R L+ + A+ DF P S+R N ++ + +
Sbjct: 89 SGGPR----VSYACGVWHDERLALKPAYRAA----DFQRQPKSSRKKINKWVSKATNKLI 140
Query: 497 SNVLRSDDFFE-SRMILTNVISFKGLWSFPFNKSDT 601
+L + ++L N I FKG WS PF + T
Sbjct: 141 REILPDGSVHGGTALVLVNAIYFKGKWSNPFPRERT 176
>11_02_0014 - 7352619-7352918,7353173-7353418
Length = 181
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +2
Query: 536 MILTNVISFKGLWSFPFNKSDT 601
++L N I FKG WS PF + T
Sbjct: 117 LVLVNAIYFKGKWSDPFPREST 138
>09_04_0391 + 17248698-17248790,17248913-17249851,17249942-17250223
Length = 437
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 377 DFRNTLQRDFGASXKVLDFDDPNSARIANTYIENS 481
D+ N L+ D G LDF SA +A TY++N+
Sbjct: 188 DWLNWLKSDVGFDGWRLDFAKGYSATVAKTYVDNT 222
>09_04_0390 + 17241546-17241638,17241715-17242653,17242753-17243037
Length = 438
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 377 DFRNTLQRDFGASXKVLDFDDPNSARIANTYIENS 481
D+ N L+ D G LDF SA +A TY++N+
Sbjct: 188 DWLNWLKSDVGFDGWRLDFAKGYSAAVAKTYVDNT 222
>09_04_0388 +
17234485-17234583,17234710-17234893,17235252-17236057,
17236148-17236432
Length = 457
Score = 29.1 bits (62), Expect = 3.0
Identities = 14/35 (40%), Positives = 20/35 (57%)
Frame = +2
Query: 377 DFRNTLQRDFGASXKVLDFDDPNSARIANTYIENS 481
D+ L+RD G LDF SA +A TY++N+
Sbjct: 207 DWLRWLRRDVGFDGWRLDFAKGYSAAVARTYVQNA 241
>10_08_0291 + 16556823-16557167,16557255-16557497,16557568-16558131
Length = 383
Score = 28.3 bits (60), Expect = 5.2
Identities = 18/74 (24%), Positives = 32/74 (43%), Gaps = 2/74 (2%)
Frame = +2
Query: 323 SLTSRNYVFLDNDFVVYQDFRNTLQR--DFGASXKVLDFDDPNSARIANTYIENSGGGRV 496
SL S+ + D + +++ LQR D GA ++ P A + GGG
Sbjct: 172 SLRSQQFALPDYVRFLISEYKKILQRLYDMGARRVLVTGTGPLGCAPAERALRGRGGGCA 231
Query: 497 SNVLRSDDFFESRM 538
V+R+ + F ++
Sbjct: 232 PQVMRAAELFNPQL 245
>10_02_0058 - 4695400-4695648,4695846-4696112,4706026-4706430
Length = 306
Score = 28.3 bits (60), Expect = 5.2
Identities = 9/20 (45%), Positives = 13/20 (65%)
Frame = -3
Query: 368 QRNHCLKTRNFYWLGTLHSS 309
+R HC + YWLGTL ++
Sbjct: 286 RREHCARHTRMYWLGTLEAA 305
>06_03_0696 + 23617687-23617851,23618838-23619536
Length = 287
Score = 27.9 bits (59), Expect = 6.8
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = -2
Query: 201 APKAMPVIRVHIPKGDNTT*PPVCDCVWYKSSIL 100
AP +P + VH+P+ T PP C SS+L
Sbjct: 5 APSRLPSVVVHLPRCTATGGPPHCRLTAEASSVL 38
>08_02_1572 -
27952418-27952727,27952872-27953133,27954018-27954107,
27955653-27955695
Length = 234
Score = 27.5 bits (58), Expect = 9.0
Identities = 14/45 (31%), Positives = 25/45 (55%)
Frame = +1
Query: 181 DRHSFRSERRKLQATQHSFHITEEAKHTYRRLQETHKRRFGSGDE 315
+RHS ERR+ + + S H +++ +R+ + HKRR S +
Sbjct: 192 ERHSEGKERRRDKQEKRSRHESDDRSKRHRK--DKHKRRHDSDSD 234
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,546,003
Number of Sequences: 37544
Number of extensions: 342182
Number of successful extensions: 856
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 854
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1490248872
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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