Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E10
         (464 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_04_0268 - 19574540-19574582,19574664-19574755,19574843-195749...    30   1.1  
03_04_0169 - 17959262-17959304,17959441-17959532,17959682-179597...    29   2.4  
10_08_0828 + 20867636-20868322                                         28   4.3  
08_02_0416 + 16902153-16902430,16903089-16903143,16903174-169032...    27   5.6  

>05_04_0268 -
           19574540-19574582,19574664-19574755,19574843-19574920,
           19575095-19575232,19575478-19575606,19575889-19576018,
           19576171-19576348,19576715-19576853,19577031-19577120,
           19577260-19577421,19577556-19577720,19577909-19578046,
           19578657-19578836,19579129-19579257,19579442-19579677,
           19579795-19579957,19580030-19580070,19580162-19580489,
           19581416-19581553,19581670-19581873
          Length = 966

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 9/20 (45%), Positives = 15/20 (75%)
 Frame = -1

Query: 80  ITSHVAILSQEWTRCCTSIC 21
           +TSH A++++ W +CC S C
Sbjct: 545 MTSHAAVVARGWGKCCVSGC 564


>03_04_0169 -
           17959262-17959304,17959441-17959532,17959682-17959759,
           17959938-17960075,17960174-17960302,17960556-17960685,
           17960797-17960974,17961177-17961315,17961399-17961488,
           17961633-17961794,17961966-17962130,17962250-17962387,
           17962827-17963006,17963405-17963533,17963878-17964113,
           17964233-17964395,17965260-17965628,17965724-17965828
          Length = 887

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 8/20 (40%), Positives = 15/20 (75%)
 Frame = -1

Query: 80  ITSHVAILSQEWTRCCTSIC 21
           +TSH A++++ W +CC + C
Sbjct: 466 MTSHAAVVARGWGKCCVAGC 485


>10_08_0828 + 20867636-20868322
          Length = 228

 Score = 27.9 bits (59), Expect = 4.3
 Identities = 17/58 (29%), Positives = 24/58 (41%), Gaps = 1/58 (1%)
 Frame = +3

Query: 9   SRSMTNTGAAPGPLLXKDCHVTCNQLLTDD-ISVAATCAKKIYKRHKFDAWYGWKNHC 179
           S +    GA  GPL+ +DC V       DD + V   C   ++     D W   +N C
Sbjct: 102 SAAAAAAGAKKGPLV-EDCPVCLEAFAGDDGVKVVPACGH-VFHAACIDQWLAVRNSC 157


>08_02_0416 +
           16902153-16902430,16903089-16903143,16903174-16903232,
           16903565-16903655
          Length = 160

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/23 (47%), Positives = 15/23 (65%)
 Frame = -3

Query: 183 VDSDFSIRTKRQTCGVCKSSLRT 115
           V +  ++ T+ QTCG  K SLRT
Sbjct: 82  VATPHTVETQHQTCGAVKQSLRT 104


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,278,825
Number of Sequences: 37544
Number of extensions: 198262
Number of successful extensions: 442
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 430
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 442
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 931320312
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)