Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E10
         (464 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical pr...    28   2.9  
AF025451-14|AAB71199.1|  577|Caenorhabditis elegans Hypothetical...    27   5.0  

>Z81508-1|CAB04142.1|  331|Caenorhabditis elegans Hypothetical
           protein F20E11.1 protein.
          Length = 331

 Score = 28.3 bits (60), Expect = 2.9
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -2

Query: 298 YPYKHFCFKLQLELVNFIRSCFMKFKAFSQQSL 200
           YP  HFC  +++  + F+ +CF    A S  SL
Sbjct: 62  YPTAHFCQMVKVSYLVFVSACFNFILAVSVNSL 94


>AF025451-14|AAB71199.1|  577|Caenorhabditis elegans Hypothetical
           protein C24H12.1 protein.
          Length = 577

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 16/45 (35%), Positives = 23/45 (51%)
 Frame = +3

Query: 51  LXKDCHVTCNQLLTDDISVAATCAKKIYKRHKFDAWYGWKNHCQH 185
           L + CH    +LL DD  ++    + I K   FD  YG+ N+C H
Sbjct: 194 LFRKCHFV--KLLGDDSYISTEDMEFILKN--FDLKYGFSNNCLH 234


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,454,371
Number of Sequences: 27780
Number of extensions: 200289
Number of successful extensions: 463
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 454
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 463
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 829055604
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)