Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E10
         (464 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.             28   0.057
DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholi...    25   0.40 
DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    21   8.6  

>AB047034-1|BAB64310.1| 1598|Apis mellifera mblk-1 protein.
          Length = 1598

 Score = 27.9 bits (59), Expect = 0.057
 Identities = 16/44 (36%), Positives = 23/44 (52%)
 Frame = -3

Query: 168  SIRTKRQTCGVCKSSLRT*LPR*CRQSVTDYKSRGNPFXGVDPV 37
            S+R+K     +C++S RT +PR  + S  D   RG    G  PV
Sbjct: 1322 SMRSKALIDQLCRNSRRTPVPRLAQDSSEDESYRGPSASGGRPV 1365


>DQ026038-1|AAY87897.1|  520|Apis mellifera nicotinic acetylcholine
           receptor beta1subunit protein.
          Length = 520

 Score = 25.0 bits (52), Expect = 0.40
 Identities = 10/29 (34%), Positives = 17/29 (58%)
 Frame = +2

Query: 281 KMFIRILCIILMFKKRKSSRNSWQISYHN 367
           K+F++ L  ILM ++ K +R  W +   N
Sbjct: 336 KIFLKYLPTILMMRRPKKTRLRWMMEIPN 364


>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 20.6 bits (41), Expect = 8.6
 Identities = 6/14 (42%), Positives = 11/14 (78%)
 Frame = -3

Query: 336 DDFRFLNISIMHNI 295
           +D+R L++  +HNI
Sbjct: 74  EDYRILDVDWLHNI 87


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 127,246
Number of Sequences: 438
Number of extensions: 2530
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 12436029
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)