Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E09
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|c...    28   0.84 
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.5  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   6.0  
SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr 2|...    25   7.9  
SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit S...    25   7.9  

>SPBC36B7.05c |||phosphatidylinositol|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 279

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -1

Query: 156 WCLDFLCQNHCNSFVCLKHNAITSEVQQAFCPAIVF 49
           WC    C N CNSF  L  ++++ +  +   P  +F
Sbjct: 51  WCGKLFCYNCCNSFAKLPVSSVSVDPTEDLIPQDMF 86


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 4.5
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 34  YTYHLEDYSWTESLLNFTSDSIVLQANETVTMILTQ 141
           + YHL+  +W  ++ NF+ D   +   E  T++L Q
Sbjct: 271 FNYHLKAANWPRTVSNFSKD---VSDGENYTVLLNQ 303


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 6.0
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 38  HIIWKTIAGQKAC*TSLVIALCFKQTKL 121
           +IIW  +AG      S+ IAL F QT L
Sbjct: 76  NIIWDVLAGCSTACLSVPIALSFAQTFL 103


>SPBC1D7.03 |mug80||cyclin Clg1 |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 461

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 11/43 (25%), Positives = 18/43 (41%)
 Frame = +1

Query: 61  WTESLLNFTSDSIVLQANETVTMILTQEIQAPHAPAGDANCTN 189
           W+ S   FTS +      +      T    AP +P+   +C+N
Sbjct: 397 WSASYSLFTSSNATYSGEQKTYSPTTLSTNAPPSPSSGRSCSN 439


>SPBC660.13c |ssb1|rpa1, rad11|DNA replication factor A subunit Ssb1
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 12/42 (28%), Positives = 18/42 (42%)
 Frame = +1

Query: 118 TVTMILTQEIQAPHAPAGDANCTNAIAGGDGKCVYLTRCYEA 243
           T+  I  + +  P  PA D N      GG  +C    + Y+A
Sbjct: 463 TIVYIRKKNVSYPACPAADCNKKVFDQGGSWRCEKCNKEYDA 504


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,072,383
Number of Sequences: 5004
Number of extensions: 37028
Number of successful extensions: 87
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 86
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 87
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)