Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E09
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0632 + 24614659-24615528,24615636-24616133                       30   1.1  
05_01_0576 - 5130589-5131995                                           28   6.1  
01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,644...    28   6.1  

>02_04_0632 + 24614659-24615528,24615636-24616133
          Length = 455

 Score = 30.3 bits (65), Expect = 1.1
 Identities = 18/60 (30%), Positives = 25/60 (41%), Gaps = 5/60 (8%)
 Frame = +1

Query: 130 ILTQEIQAP-----HAPAGDANCTNAIAGGDGKCVYLTRCYEARNITVDLYKTTYCIVDG 294
           +LT E   P       P G    T +I   D   V  + C +   +TVD+Y   Y + DG
Sbjct: 115 VLTSEYALPVLRLGDVPPGGVTTTVSIDDPDQYAVVFSNCQDGVEVTVDVYTEMYNVRDG 174


>05_01_0576 - 5130589-5131995
          Length = 468

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 85  TSDSIVLQANETVTMILTQEIQAPHAPAGDANCTNAIAGGDG 210
           T  SI+LQ    +T +LT+ ++ P + A  A+   A++G  G
Sbjct: 196 TCHSIILQVCAAITAVLTRVVRWPDSHAAAASRFQALSGIPG 237


>01_01_0827 + 6443319-6446085,6446317-6446407,6446502-6448017,
            6448164-6448243,6449045-6449129,6449221-6449312,
            6449388-6449456,6449544-6449580,6449662-6449744,
            6450427-6450873,6450978-6451014,6451101-6451158,
            6451243-6451382,6451610-6451675,6451794-6451908,
            6453261-6453299,6453482-6453543
          Length = 1927

 Score = 27.9 bits (59), Expect = 6.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = +1

Query: 34   YTYHLEDYSWTESLLNFTSDSI 99
            Y +H+ D+ ++  LLNFT++ I
Sbjct: 1094 YLFHMSDHMFSSMLLNFTAEDI 1115


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,708,958
Number of Sequences: 37544
Number of extensions: 221196
Number of successful extensions: 541
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 527
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 541
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)