Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E08
         (649 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces...   151   1e-37
SPCC61.05 |||S. pombe specific multicopy membrane protein family...    27   2.3  
SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    27   3.1  
SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    25   7.1  
SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|c...    25   7.1  
SPBC646.09c |int6|yin6|translation initiation factor eIF3e|Schiz...    25   7.1  
SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|...    25   9.4  
SPBC16A3.08c |||nuclear telomere cap complex subunit |Schizosacc...    25   9.4  

>SPAC664.05 |rpl13||60S ribosomal protein L13|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 208

 Score =  151 bits (365), Expect = 1e-37
 Identities = 73/133 (54%), Positives = 93/133 (69%), Gaps = 1/133 (0%)
 Frame = +2

Query: 29  IPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPTVRYHT 208
           +PN HFHKDWQR+VKTWFNQP R+ RR+Q R               +RP V+ PT+RY+ 
Sbjct: 9   LPNAHFHKDWQRYVKTWFNQPGRKLRRRQAR-QTKAAKIAPRPVEAIRPAVKPPTIRYNM 67

Query: 209 KVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRARLILFP 388
           KVRAGRGFTL E++A+G++   A TIGI VD RRRN+S ESLQ NV+R+K Y A LI+FP
Sbjct: 68  KVRAGRGFTLEELKAAGVSRRVASTIGIPVDHRRRNRSEESLQRNVERIKVYLAHLIVFP 127

Query: 389 -KGKKVLKGEANE 424
            K  +  KG+A +
Sbjct: 128 RKAGQPKKGDATD 140



 Score = 40.7 bits (91), Expect = 2e-04
 Identities = 21/54 (38%), Positives = 31/54 (57%)
 Frame = +1

Query: 460 LMPVQQTAPKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAENPD 621
           ++P+ Q A +  A+PITE+ KNF A+  L   R+ A+  G RA   K  AE  +
Sbjct: 152 VLPITQEAVEE-AKPITEEAKNFNAFSTLSNERAYARYAGARAAFQKKRAEEAE 204


>SPCC61.05 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 469

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 14/43 (32%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
 Frame = -1

Query: 130 LFYSILLSTMTTSWLIKPCLHKS--LPILMEMAIWYHIIPFTH 8
           L  S+ L  +T +WL++    +S   P  + +A W  I  FTH
Sbjct: 204 LAISMFLGFITLTWLLRCIKSQSGVQPAQISLAFWVFIFVFTH 246


>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1085

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 11/31 (35%), Positives = 20/31 (64%)
 Frame = +1

Query: 523 NFKAYQYLRGARSIAKLVGIRAKRLKDAAEN 615
           N ++ ++LR A S A++VG   +R++   EN
Sbjct: 843 NNRSEEFLRNAASQAEIVGANKERIQKTVEN 873


>SPAC1A6.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 636

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 12/35 (34%), Positives = 16/35 (45%)
 Frame = +1

Query: 445 QLRGPLMPVQQTAPKSVARPITEDEKNFKAYQYLR 549
           Q   P+ PVQ   P   A+P  ED    +  + LR
Sbjct: 430 QPSSPVQPVQNVKPAQPAQPSLEDAAKRRVEEMLR 464


>SPCC830.04c |mug128||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 143

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = -2

Query: 648 HSCRCFSDIIRI 613
           H+CRCF  ++RI
Sbjct: 63  HTCRCFQQVVRI 74


>SPBC646.09c |int6|yin6|translation initiation factor
           eIF3e|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 501

 Score = 25.4 bits (53), Expect = 7.1
 Identities = 11/28 (39%), Positives = 15/28 (53%)
 Frame = +2

Query: 263 NPSFARTIGIAVDPRRRNKSVESLQINV 346
           NPS A    +A D    ++S+ES   NV
Sbjct: 396 NPSVAAASNVAADQSTEDESIESTSTNV 423


>SPCC962.03c |cut15||karyopherin Cut15|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 542

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 12/18 (66%), Positives = 14/18 (77%)
 Frame = +2

Query: 527 SKLINTLEELVLLPNLWA 580
           SKLI TL+E VL+  LWA
Sbjct: 254 SKLIYTLDEDVLVDALWA 271


>SPBC16A3.08c |||nuclear telomere cap complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 284

 Score = 25.0 bits (52), Expect = 9.4
 Identities = 13/43 (30%), Positives = 21/43 (48%)
 Frame = +1

Query: 484 PKSVARPITEDEKNFKAYQYLRGARSIAKLVGIRAKRLKDAAE 612
           P     P  E+E      +YL   +S AK VG   ++L++A +
Sbjct: 161 PSGAQTPAAEEENVKTLDEYLSERKSAAKPVGRTVEKLENATK 203


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,581,328
Number of Sequences: 5004
Number of extensions: 47712
Number of successful extensions: 154
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 148
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 153
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 291768710
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)