Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E08
         (649 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal prote...   155   3e-38
U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal prote...    93   1e-19
Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical pr...    28   6.6  
Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical pr...    28   6.6  
U64833-5|AAK95860.1|  402|Caenorhabditis elegans Hypothetical pr...    27   8.7  

>U88308-7|AAB42322.1|  207|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform a protein.
          Length = 207

 Score =  155 bits (375), Expect = 3e-38
 Identities = 73/140 (52%), Positives = 96/140 (68%), Gaps = 1/140 (0%)
 Frame = +2

Query: 14  KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 193
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR VVRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 194 VRYHTKVRAGRGFTLREIRASGLNPSFARTIGIAVDPRRRNKSVESLQINVQRLKEYRAR 373
            RY+TK R GRGF+L+E++A+G++ + ARTIGIAVD RR NK+ E L+ N  RLKEY+A+
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAGISQAQARTIGIAVDVRRTNKTAEGLKANADRLKEYKAK 123

Query: 374 LILFP-KGKKVLKGEANEEE 430
           LILFP K     KG+++ EE
Sbjct: 124 LILFPKKASAPKKGDSSAEE 143


>U88308-8|AAO61436.1|   88|Caenorhabditis elegans Ribosomal protein,
           large subunitprotein 13, isoform b protein.
          Length = 88

 Score = 93.5 bits (222), Expect = 1e-19
 Identities = 41/84 (48%), Positives = 54/84 (64%)
 Frame = +2

Query: 14  KGNNMIPNGHFHKDWQRFVKTWFNQPARRHRRKQNRIXXXXXXXXXXXXXXLRPVVRCPT 193
           +GN M+ N HF K W + +KTWF+QPAR+ RR+QNR               LR VVRCP 
Sbjct: 4   RGNQMLGNAHFRKHWHKRIKTWFDQPARKLRRRQNRQAKAVEIAPRPVAGLLRSVVRCPQ 63

Query: 194 VRYHTKVRAGRGFTLREIRASGLN 265
            RY+TK R GRGF+L+E++A+  N
Sbjct: 64  KRYNTKTRLGRGFSLQELKAAEEN 87


>Z75532-6|CAA99813.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 115 LLSTMTTSWLIKPCLHKSLPILMEMAIWYH 26
           LL+ +  SW + P +H +LPIL    I  H
Sbjct: 56  LLAELLNSWFLIPVVHVNLPILRFTGILSH 85


>Z75530-9|CAA99797.2|  330|Caenorhabditis elegans Hypothetical
           protein C47E8.2 protein.
          Length = 330

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = -1

Query: 115 LLSTMTTSWLIKPCLHKSLPILMEMAIWYH 26
           LL+ +  SW + P +H +LPIL    I  H
Sbjct: 56  LLAELLNSWFLIPVVHVNLPILRFTGILSH 85


>Z70038-7|CAA93886.2|  373|Caenorhabditis elegans Hypothetical
           protein ZK1067.7 protein.
          Length = 373

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/21 (52%), Positives = 13/21 (61%)
 Frame = +1

Query: 178 CSLPYCALSYKSSCRQRIYPT 240
           CS P C  S +SSC+Q   PT
Sbjct: 204 CSTPICIQSCQSSCQQACQPT 224


>U64833-5|AAK95860.1|  402|Caenorhabditis elegans Hypothetical
           protein B0507.10 protein.
          Length = 402

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 14/46 (30%), Positives = 22/46 (47%)
 Frame = -2

Query: 642 CRCFSDIIRIFCRILQSLGSDAHKFGNRTSSSKVLISFEVLLILSD 505
           CR   +  R FC    S+ +      NR  + + LI F++  +LSD
Sbjct: 225 CRNLINRHRAFCNSYNSIEAQLMNIDNRMKAGRPLIDFDMEDLLSD 270


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,184,956
Number of Sequences: 27780
Number of extensions: 267994
Number of successful extensions: 661
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 649
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 661
length of database: 12,740,198
effective HSP length: 79
effective length of database: 10,545,578
effective search space used: 1434198608
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)