Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E07
         (587 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC16D10.05 |mok13||alpha-1,3-glucan synthase Mok13|Schizosacch...    27   2.0  
SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase Mok11|S...    26   3.5  
SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase ki...    26   3.5  
SPAC20G8.08c |fft1||fun thirty related protein Fft1|Schizosaccha...    26   4.7  
SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|c...    25   6.2  
SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual           25   6.2  
SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase Gsk3|Schi...    25   6.2  
SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog...    25   6.2  
SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor |Schizosacc...    25   8.2  

>SPBC16D10.05 |mok13||alpha-1,3-glucan synthase
            Mok13|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 2358

 Score = 27.1 bits (57), Expect = 2.0
 Identities = 12/48 (25%), Positives = 26/48 (54%)
 Frame = +3

Query: 270  SWRGHHTLTLFFWRQCSHRILLVKR*GLCTMNSEPTLLKS*CAHIWSF 413
            +W+GHH + + +W + +     ++  GL +++S P L  +   + W F
Sbjct: 908  TWKGHHVI-VQYWSRLTASANYIQEGGLGSLSSFPHLYMNGPYNQWGF 954


>SPAC1527.01 |mok11|SPAC23D3.15|alpha-1,3-glucan synthase
            Mok11|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 2397

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 25/104 (24%), Positives = 46/104 (44%), Gaps = 10/104 (9%)
 Frame = +2

Query: 305  LEAMFSQNFISKEVRSVYYE---LRANTIE----ELMRPHLVIYLDT---PVDXVIQLIK 454
            +  M  +NF+ K  R  + E   LR  T++    + ++    + L+T   P    I+   
Sbjct: 1869 MNEMCIENFLMKCTRKYFDEVRKLRLGTLKPENLQFVKDPSSLALETNLLPASDTIEEKN 1928

Query: 455  SRGHEHEVKGKALTPNFLTEIEKQYKTKYLKDISTHAELLVYDW 586
              G++ +V    L P FL E E  Y+ + L  +    ++ +Y W
Sbjct: 1929 DVGNK-QVNSHILDPGFLKEEECVYEFEQLHGLRKALQVEIYGW 1971


>SPAC1006.09 |win1|SPAC1250.06c, SPAPJ730.01|MAP kinase kinase
           kinase Win1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1436

 Score = 26.2 bits (55), Expect = 3.5
 Identities = 11/36 (30%), Positives = 18/36 (50%)
 Frame = -2

Query: 277 LQDHSLACIQQMSQSINVLTVPCYIHHNLEVSCQTV 170
           LQ+HSL   +     ++VLT    + H LE+    +
Sbjct: 432 LQEHSLYASESFQHKLDVLTAYSNVTHALEIQVNII 467


>SPAC20G8.08c |fft1||fun thirty related protein
           Fft1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 944

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/39 (33%), Positives = 21/39 (53%)
 Frame = +1

Query: 367 QSQHY*RADAPTFGHLFRHTCRXCDSINQESWP*TRSER 483
           Q++H     + T G+  R   + C S+  ES+  T+SER
Sbjct: 462 QNRHLVVVPSSTLGNWLREFEKFCPSLRVESYSGTQSER 500


>SPBC31F10.05 |mug37||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 217

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +1

Query: 268 GLGEVTIL*LCFSGGNVLTEFY**RGEVCVL 360
           GL   ++L  CF  G VL  F   R +VC++
Sbjct: 95  GLSSESVLRTCFRVGEVLAVFRMKRRDVCII 125


>SPBC776.08c |||Nrap|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1097

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 10/43 (23%), Positives = 24/43 (55%)
 Frame = +2

Query: 203 YIARYSQYIDALTHLLNTGQGVVLERSPYSDFVFLEAMFSQNF 331
           ++ + ++ ++AL ++     G+    +P  +  FL+ +FS NF
Sbjct: 717 FLLKIAELLEALDNVERASVGLENTDNPTHNCCFLQVLFSNNF 759


>SPAC1687.15 |gsk3|skp1|serine/threonine protein kinase
           Gsk3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 387

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 11/41 (26%), Positives = 23/41 (56%)
 Frame = +2

Query: 386 ELMRPHLVIYLDTPVDXVIQLIKSRGHEHEVKGKALTPNFL 508
           ELM  H +   ++ +D ++++IK  G     + K + PN++
Sbjct: 225 ELMLGHPLFPGESGIDQLVEIIKILGTPSREQIKTMNPNYM 265


>SPBC19G7.01c |msh2|swi8, mut3, SPBC24C6.12c|MutS protein homolog
           2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 982

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 12/35 (34%), Positives = 18/35 (51%)
 Frame = +2

Query: 65  IHYVRPNGIDLRIFDKQVP*DTRTFDHINFNQTPN 169
           I YVRPN +D  I  ++    +   D ++   TPN
Sbjct: 634 IPYVRPNIVDSSIAQEKHGQSSNILDIVSLEDTPN 668


>SPBC557.03c |pim1|dcd1, ptr2|GDP/GTP exchange factor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 539

 Score = 25.0 bits (52), Expect = 8.2
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = -2

Query: 229 NVLTVPCYIHHNLEVSCQTVIWS 161
           NV+ V C  HHNL V+    ++S
Sbjct: 401 NVIQVVCGTHHNLAVTSDGKVYS 423


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,444,705
Number of Sequences: 5004
Number of extensions: 48031
Number of successful extensions: 130
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 124
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 130
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)