Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E07
         (587 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0356 - 17142019-17142899,17145251-17145290,17145381-171455...    28   4.8  
06_01_0927 - 7155348-7155753,7156053-7156252,7156401-7156501,715...    28   4.8  
09_02_0476 + 9728729-9730739,9730930-9730991                           28   6.3  
08_02_0505 + 17897038-17898870,17899049-17899108,17900034-179001...    28   6.3  
07_01_0890 - 7437901-7439339,7439452-7439657,7439841-7440171,744...    28   6.3  
06_03_1283 - 28957729-28959258,28959354-28959550,28959824-289600...    28   6.3  
04_04_0963 - 29743363-29744450,29744729-29745043,29745116-297454...    27   8.4  

>07_03_0356 -
           17142019-17142899,17145251-17145290,17145381-17145512,
           17145762-17145815,17145913-17145993,17146860-17146955,
           17147439-17147611,17147750-17147823,17148515-17148622,
           17148693-17148868,17149305-17149352,17150665-17150775,
           17152172-17152226,17153434-17153534,17154176-17154290,
           17155505-17155698
          Length = 812

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 12/42 (28%), Positives = 24/42 (57%), Gaps = 1/42 (2%)
 Frame = +2

Query: 425 PVDXVIQLIKSRGHEHEVKGKALT-PNFLTEIEKQYKTKYLK 547
           P D   +++K+  H H++KG+ L+    + E E++ K +  K
Sbjct: 643 PADYYAEMVKTDAHMHKIKGRLLSEKKKIEEAEERKKAREAK 684


>06_01_0927 -
           7155348-7155753,7156053-7156252,7156401-7156501,
           7156646-7156862
          Length = 307

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 16/34 (47%), Positives = 22/34 (64%), Gaps = 1/34 (2%)
 Frame = +2

Query: 401 HLVIYLD-TPVDXVIQLIKSRGHEHEVKGKALTP 499
           HLVI++D TPV  V++ + SRG E E   K + P
Sbjct: 171 HLVIFVDETPV-RVLKNLTSRGPEFEFPAKPMRP 203


>09_02_0476 + 9728729-9730739,9730930-9730991
          Length = 690

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 576 TRSSACVEMSFKYLVLYCFSI 514
           TRS +C +  F YLV YC S+
Sbjct: 603 TRSVSCHQSLFPYLVYYCHSV 623


>08_02_0505 +
           17897038-17898870,17899049-17899108,17900034-17900150,
           17900352-17900389,17900446-17900641
          Length = 747

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -3

Query: 576 TRSSACVEMSFKYLVLYCFSI 514
           TRS +C +  F YLV YC S+
Sbjct: 540 TRSVSCHQSLFPYLVYYCHSV 560


>07_01_0890 -
           7437901-7439339,7439452-7439657,7439841-7440171,
           7440268-7440405,7440619-7440874,7440963-7441318,
           7441421-7441709
          Length = 1004

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 12/25 (48%), Positives = 16/25 (64%)
 Frame = -3

Query: 150 LIWSNVLVSYGTCLSNILKSMPLGR 76
           ++W+ VL   GTCL  +L SM L R
Sbjct: 707 VLWAAVLADVGTCLLVVLNSMTLLR 731


>06_03_1283 -
           28957729-28959258,28959354-28959550,28959824-28960026,
           28960097-28960424,28960524-28960661,28960765-28961020,
           28961529-28961626,28963104-28963367,28964395-28964584
          Length = 1067

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 14/25 (56%), Positives = 16/25 (64%)
 Frame = -3

Query: 150 LIWSNVLVSYGTCLSNILKSMPLGR 76
           LIW+ VL   GTCL  I+ SM L R
Sbjct: 673 LIWAAVLADVGTCLLVIMYSMLLLR 697


>04_04_0963 -
           29743363-29744450,29744729-29745043,29745116-29745477,
           29745947-29746013,29746111-29746954
          Length = 891

 Score = 27.5 bits (58), Expect = 8.4
 Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 2/33 (6%)
 Frame = -2

Query: 205 IHHNLEVSCQTVIWSLIKVDMVKCSSIL--WHL 113
           I H +  +C T +WS + V M  C + L  WHL
Sbjct: 276 IEHLIPDNCATKVWSYVNVQM-NCDAQLEGWHL 307


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,491,026
Number of Sequences: 37544
Number of extensions: 295832
Number of successful extensions: 704
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 693
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 704
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1388195172
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)