Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E06
         (582 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    28   1.1  
SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr...    26   4.6  
SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces ...    26   4.6  
SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr 2|||Ma...    26   4.6  
SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|ch...    25   6.1  
SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   8.1  
SPBC15D4.01c ||SPBC2D10.21c|kinesin-like protein|Schizosaccharom...    25   8.1  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    25   8.1  
SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomy...    25   8.1  

>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 27.9 bits (59), Expect = 1.1
 Identities = 16/46 (34%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
 Frame = +1

Query: 190 NETNAVNAESVDKPDTSYQYQPLSIPQHFS-MARPQLASFSSYADV 324
           N  N   +E+ ++ +     +P+ IPQHFS +ARP L S  +  D+
Sbjct: 319 NNENHDQSENKEEEEDMMLTRPIEIPQHFSPIARP-LTSQEAIVDM 363


>SPAC57A7.13 |||RNA-binding protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 565

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = -1

Query: 447 YDRCGQWR*-TRPFHRRYWSPLY*FQIYVPVIIITFKFNPV 328
           Y    +W+  T+  +  YW P     IYVP  I T +F P+
Sbjct: 300 YTESARWQFPTKTGYLVYWDPELYCSIYVPEGIDTDQFKPI 340


>SPBC1709.11c |png2||ING family homolog Png2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 305

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 12/42 (28%), Positives = 21/42 (50%), Gaps = 2/42 (4%)
 Frame = +1

Query: 196 TNAVN--AESVDKPDTSYQYQPLSIPQHFSMARPQLASFSSY 315
           T+A+N     +D+ D  ++Y  L IPQ   +  P   +  +Y
Sbjct: 91  TDAMNNIKSCIDRLDAGFEYVELEIPQQLRLGYPDDRALMNY 132


>SPBC1778.06c |fim1||fimbrin|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 614

 Score = 25.8 bits (54), Expect = 4.6
 Identities = 11/36 (30%), Positives = 20/36 (55%)
 Frame = +1

Query: 463 YTYHLEDYSWTESLLNFTSDSIVLQANETVTMILTQ 570
           + YHL+  +W  ++ NF+ D   +   E  T++L Q
Sbjct: 271 FNYHLKAANWPRTVSNFSKD---VSDGENYTVLLNQ 303


>SPCC320.05 |||sulphate transporter |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 667

 Score = 25.4 bits (53), Expect = 6.1
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +2

Query: 467 HIIWKTIAGQKAC*TSLVIALCFKQTKL 550
           +IIW  +AG      S+ IAL F QT L
Sbjct: 76  NIIWDVLAGCSTACLSVPIALSFAQTFL 103


>SPAC17G8.12 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 608

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 15/50 (30%), Positives = 22/50 (44%)
 Frame = +1

Query: 124 ALTLALKYEFVTPLTSLVVVKPNETNAVNAESVDKPDTSYQYQPLSIPQH 273
           A   AL     TP       KP+ ++ V+A+SV +  T     P   P+H
Sbjct: 384 ATQAALSSSLETPSVLTSSYKPSSSSKVSAKSVSRKPTGAPAIPKLPPKH 433


>SPBC15D4.01c ||SPBC2D10.21c|kinesin-like
           protein|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 633

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 13/52 (25%), Positives = 25/52 (48%)
 Frame = -3

Query: 205 LHSFHLVSLLPKTSEV*QIHTSELTLKLSFQDCFPYSCLRREYQRHLFRPII 50
           L+ + ++   P+ S   ++  S+   K SF   FP SC + +    +  P+I
Sbjct: 27  LNDYEILLESPEDSHAYRVSKSKTLEKASFTKVFPPSCTQLDVFSTICAPLI 78


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 12/28 (42%), Positives = 18/28 (64%), Gaps = 1/28 (3%)
 Frame = +1

Query: 184 KPNET-NAVNAESVDKPDTSYQYQPLSI 264
           KP  T NA N ++ ++ +T Y YQP +I
Sbjct: 847 KPMTTPNAYNIKNSNQRETKYPYQPQAI 874


>SPBC3B8.05 |||diphthamide biosynthesis protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 436

 Score = 25.0 bits (52), Expect = 8.1
 Identities = 10/23 (43%), Positives = 16/23 (69%)
 Frame = -3

Query: 355 HHNFQIQPCLRHQRTRRMKRVAV 287
           ++NF+I   + H R R+ KRVA+
Sbjct: 72  NYNFEIHKTIWHIRLRKAKRVAL 94


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.315    0.131    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,300,894
Number of Sequences: 5004
Number of extensions: 44030
Number of successful extensions: 144
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 141
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 144
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)