Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E06
         (582 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

U88170-11|AAB42249.1|  227|Caenorhabditis elegans Hypothetical p...    31   0.79 
AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical ...    30   1.0  
U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical pr...    28   4.2  
U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical pr...    28   4.2  
AC006662-5|AAF39894.1|  501|Caenorhabditis elegans Hypothetical ...    28   4.2  
U49940-1|AAA93411.2|  435|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AC084160-4|AAK39374.1|  240|Caenorhabditis elegans Hypothetical ...    27   9.7  

>U88170-11|AAB42249.1|  227|Caenorhabditis elegans Hypothetical
           protein C10G11.10 protein.
          Length = 227

 Score = 30.7 bits (66), Expect = 0.79
 Identities = 20/84 (23%), Positives = 36/84 (42%)
 Frame = +1

Query: 178 VVKPNETNAVNAESVDKPDTSYQYQPLSIPQHFSMARPQLASFSSYADVSDRVEFESYDD 357
           +      NA+  +S  +P T  Q  P+   +     +    + +  A V  + EFE  D+
Sbjct: 39  IASQTSANALVPQSSSQPSTPIQAPPIKNEEDDDDVK---FNITVKAPVEKKDEFEGDDE 95

Query: 358 DGHIYLKSIQRRPVPPVKWPSSTP 429
           +  +   +I+ +P  PV  P  TP
Sbjct: 96  ENPLAKLAIKTKPKKPVDAPVKTP 119


>AC024772-3|AAF60538.1| 2344|Caenorhabditis elegans Hypothetical
            protein Y40C5A.3 protein.
          Length = 2344

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 28/95 (29%), Positives = 42/95 (44%), Gaps = 5/95 (5%)
 Frame = +1

Query: 175  VVVKPNETNAVNAESVDKPDTSYQYQPLSIPQHFSMARPQLASFSSYADVSDRVEFESYD 354
            ++ K   + A++ ESV   +    Y   ++PQ  S+A  +  S SS    +  V   SY 
Sbjct: 1548 MISKYISSKAISTESVSSAEQP-SYLSSNLPQSSSVASVKPPSNSSSVGQNIEVTVPSYF 1606

Query: 355  DDGHIYLKSIQRRPVPPVKWPS-----STPLTTPV 444
                   KS+ + P+PP   PS     S P T PV
Sbjct: 1607 PVEQS--KSVTQAPIPPASSPSAPSIPSIPSTLPV 1639


>U28737-8|ABA61869.1|  537|Caenorhabditis elegans Hypothetical
           protein F14B8.5a protein.
          Length = 537

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 212 RNLLINRILRTNTNHYLYLNTFLWRDRNSLHSPRT 316
           +N LIN+  +TN NH ++LN  +      L SP T
Sbjct: 476 QNHLINQNHQTNQNHQIHLNGSVHNGEPRLDSPST 510


>U28737-7|ABA61870.1|  501|Caenorhabditis elegans Hypothetical
           protein F14B8.5b protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 14/35 (40%), Positives = 20/35 (57%)
 Frame = +2

Query: 212 RNLLINRILRTNTNHYLYLNTFLWRDRNSLHSPRT 316
           +N LIN+  +TN NH ++LN  +      L SP T
Sbjct: 440 QNHLINQNHQTNQNHQIHLNGSVHNGEPRLDSPST 474


>AC006662-5|AAF39894.1|  501|Caenorhabditis elegans Hypothetical
           protein H23L24.2 protein.
          Length = 501

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 20/51 (39%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
 Frame = +1

Query: 277 SMARPQLASFSSYADVSDRVEFE--SYDDDGHIYL-KSIQRRPVPPVKWPS 420
           ++A PQL  F SYA   D  EFE   Y +   I L K+I+     P  +PS
Sbjct: 259 TLAPPQLVLFRSYAPRIDSKEFEQLGYFNPNKILLWKAIRCTTAAPTYFPS 309


>U49940-1|AAA93411.2|  435|Caenorhabditis elegans Hypothetical
           protein T24D11.1 protein.
          Length = 435

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/43 (39%), Positives = 21/43 (48%)
 Frame = +1

Query: 262 IPQHFSMARPQLASFSSYADVSDRVEFESYDDDGHIYLKSIQR 390
           IPQHF M   Q  S +S + V D   +  Y     +Y K IQR
Sbjct: 111 IPQHFRMIAWQNLSNASVSSVHDL--YSDYMRQSSVYEKVIQR 151


>AC084160-4|AAK39374.1|  240|Caenorhabditis elegans Hypothetical
           protein Y73B3B.2 protein.
          Length = 240

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 17/43 (39%), Positives = 23/43 (53%)
 Frame = -3

Query: 442 PVWSMALN*AISQEVLVSVVLISNICARHHHNFQIQPCLRHQR 314
           PV++ AL      +   S+V+I   CA HH   +IQP  R QR
Sbjct: 49  PVYTRALRAPRDLKPGESIVMIRGFCAFHH---EIQPDHRSQR 88


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.315    0.131    0.380 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,582,221
Number of Sequences: 27780
Number of extensions: 241853
Number of successful extensions: 973
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 893
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 973
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1215936170
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)