Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E04
         (538 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces pombe...    27   1.8  
SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    27   2.3  
SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr...    25   5.4  

>SPAC2C4.06c |||rRNA methyltransferase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 455

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 11/26 (42%), Positives = 18/26 (69%)
 Frame = +3

Query: 33  YKVASNILKQVSTEGGSVKSLLYDNK 110
           Y  A+NIL  +S + GS+K L +++K
Sbjct: 4   YNHAANILSDLSKKKGSIKQLAFNSK 29


>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 14/30 (46%), Positives = 20/30 (66%), Gaps = 3/30 (10%)
 Frame = -1

Query: 265 MAYTKKCNKR*CKHSNTI--QKKVCQ-CKS 185
           +   +KCNK   +HS +I  QK+VC+ CKS
Sbjct: 265 LCINEKCNKLYGRHSKSINPQKQVCRLCKS 294


>SPAC11D3.17 |||zinc finger protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 585

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 9/24 (37%), Positives = 13/24 (54%)
 Frame = -1

Query: 250 KCNKR*CKHSNTIQKKVCQCKSSP 179
           +C KR  +H N  + K C  K+ P
Sbjct: 35  QCAKRFTRHENLTRHKACHSKAEP 58


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,901,634
Number of Sequences: 5004
Number of extensions: 32448
Number of successful extensions: 96
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 222442660
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)