Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E04
         (538 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0932 + 12495700-12495738,12495859-12496093,12496178-124964...    29   3.1  
02_04_0012 - 18891917-18893091,18893209-18893323,18893425-188934...    28   4.1  
02_04_0009 - 18865087-18866249,18866357-18866471,18866555-188666...    27   7.2  
07_03_1210 + 24903389-24903695,24904383-24904468,24904545-249046...    27   9.5  
03_02_0914 - 12351553-12351679,12351966-12352102,12352558-123526...    27   9.5  

>03_02_0932 +
           12495700-12495738,12495859-12496093,12496178-12496423,
           12496519-12496572,12497329-12497589,12497750-12497802,
           12497893-12498016,12498147-12498401,12498798-12499888,
           12500001-12500007,12500316-12500445,12500617-12500731,
           12500783-12500853,12501246-12501354,12501550-12501738,
           12502519-12502644,12503048-12503563
          Length = 1206

 Score = 28.7 bits (61), Expect = 3.1
 Identities = 13/29 (44%), Positives = 20/29 (68%)
 Frame = +3

Query: 450 IKVI*T*SKIEGWIYIPNCLFLVLLVSIA 536
           +KV+ T  KI G IYIP   +L++++ IA
Sbjct: 379 VKVVHTSDKIHGQIYIPEINWLLMILCIA 407


>02_04_0012 -
           18891917-18893091,18893209-18893323,18893425-18893477,
           18893553-18893813,18896451-18896501,18896629-18896877,
           18897046-18897268,18897371-18897487
          Length = 747

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/29 (41%), Positives = 20/29 (68%)
 Frame = +3

Query: 450 IKVI*T*SKIEGWIYIPNCLFLVLLVSIA 536
           ++V+ T +K EG +YIP   FL+ + S+A
Sbjct: 398 VEVVHTSNKYEGQVYIPEVNFLIGVASVA 426


>02_04_0009 -
           18865087-18866249,18866357-18866471,18866555-18866607,
           18866703-18866963,18867100-18867150,18867255-18867503,
           18867634-18867856,18867958-18868071
          Length = 742

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 12/29 (41%), Positives = 19/29 (65%)
 Frame = +3

Query: 450 IKVI*T*SKIEGWIYIPNCLFLVLLVSIA 536
           ++V+ T +K EG +YIP   FL+   S+A
Sbjct: 397 VEVVHTSNKYEGQVYIPEVNFLIGAASVA 425


>07_03_1210 +
           24903389-24903695,24904383-24904468,24904545-24904649,
           24904737-24905531,24905719-24905941,24906318-24906712
          Length = 636

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 11/37 (29%), Positives = 19/37 (51%)
 Frame = +2

Query: 368 QAYHEKEYDEHGNEIDQHSYPTLLNESDKSNLNLKQD 478
           Q YH K +  +G  I  HS+  +++E +   L   +D
Sbjct: 151 QLYHYKAFCRNGTTISTHSFVLVMSEEESRYLAYLED 187


>03_02_0914 -
           12351553-12351679,12351966-12352102,12352558-12352653,
           12353056-12353989,12354985-12355175
          Length = 494

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = -1

Query: 454 FIRFIKQCWI*MLVYXXXXXXXXXXXICLVGIYTYYYVNYNDTS*NRP 311
           F++F++ CW  +L             +C +  + + Y N+N T  NRP
Sbjct: 226 FLQFVR-CWKDILQLHYHITAVIALGMCEMAFWYFEYANFNSTG-NRP 271


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,238,831
Number of Sequences: 37544
Number of extensions: 175126
Number of successful extensions: 354
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 350
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 354
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)