Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E03
         (539 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein L34|S...    79   5e-16
SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein L34|Sc...    75   9e-15
SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit Air1|Schi...    29   0.33 
SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|ch...    26   3.1  
SPCC1183.04c |pet127||mitochondrial membrane protein Pet127|Schi...    26   3.1  
SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1 |Schizosacch...    26   4.1  
SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomy...    26   4.1  
SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr ...    25   7.2  
SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16 |Schizosa...    25   9.5  
SPBC2F12.10 |||mitochondrial ribosomal protein subunit L35|Schiz...    25   9.5  

>SPAC23A1.08c |rpl3401|rpl34, rpl34-1|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 112

 Score = 78.6 bits (185), Expect = 5e-16
 Identities = 41/87 (47%), Positives = 53/87 (60%)
 Frame = -1

Query: 497 MVQRLTFRRRLSYNTKSNQRRIVRTPGVRLVYQYVKKPKKIPRCGQGKSKLPGIQPARPA 318
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNRTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 317 ERFRFCTRKKTSEARLWRVSLCTNGVK 237
           E  R    KKT + R +   L  N VK
Sbjct: 61  EFARLSHNKKTVQ-RAYGGCLSANAVK 86


>SPCC1322.15 |rpl3402|rpl34, rpl34-2|60S ribosomal protein
           L34|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 111

 Score = 74.5 bits (175), Expect = 9e-15
 Identities = 39/87 (44%), Positives = 52/87 (59%)
 Frame = -1

Query: 497 MVQRLTFRRRLSYNTKSNQRRIVRTPGVRLVYQYVKKPKKIPRCGQGKSKLPGIQPARPA 318
           M QR+T+RRRL+YNT+SN+ RI++TPG  + Y ++KK   IPRCG     L GI   RP 
Sbjct: 1   MAQRVTYRRRLAYNTRSNKTRIIKTPGNNIRYLHIKKLGTIPRCGDTGVPLQGIPALRPR 60

Query: 317 ERFRFCTRKKTSEARLWRVSLCTNGVK 237
           E  R    +K  + R +   L  N VK
Sbjct: 61  EFARLSHNQKKVQ-RAYGGCLSANAVK 86


>SPBP35G2.08c |air1||zinc knuckle TRAMP complex subunit
           Air1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 313

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 19/70 (27%), Positives = 29/70 (41%)
 Frame = -1

Query: 476 RRRLSYNTKSNQRRIVRTPGVRLVYQYVKKPKKIPRCGQGKSKLPGIQPARPAERFRFCT 297
           RR  + N KS+++R    PG  L  +   KPK   R     S+  G      ++  +F  
Sbjct: 244 RREQNRNQKSSKQRPFHKPGNSLASRLGSKPKSFKRKHSPPSEENGNLSFHSSDGRKFTK 303

Query: 296 RKKTSEARLW 267
             K +  R W
Sbjct: 304 TSKKNRKRKW 313


>SPBC839.02 |||arrestin Aly1 related|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 530

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 11/36 (30%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = -1

Query: 398 YVKKPKKIP--RCGQGKSKLPGIQPARPAERFRFCT 297
           Y+  P ++   RC  G + LP   P  P+    FC+
Sbjct: 410 YIDSPVRLLSCRCSDGSTMLPAYCPIIPSSEVNFCS 445


>SPCC1183.04c |pet127||mitochondrial membrane protein
           Pet127|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 524

 Score = 26.2 bits (55), Expect = 3.1
 Identities = 18/68 (26%), Positives = 35/68 (51%)
 Frame = -2

Query: 514 KICATKWCNGLHSDDVCLTTQSQTKGE*YELLEFAWYTSMLRNLRRSRGVVRARVNYPVS 335
           ++CA ++ NG+H   V    + +T    Y   +     ++LRN  R R  ++ R +  +S
Sbjct: 445 EVCALQFVNGVHKSVVKHLDEKETWSIKYHFRKPRDQDNLLRNYIRLRDDIKRRES-KIS 503

Query: 334 SPRGPQSV 311
           +P  P+S+
Sbjct: 504 NP--PESL 509


>SPAC22F3.08c |rok1||ATP-dependent RNA helicase Rok1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 481

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/28 (39%), Positives = 16/28 (57%)
 Frame = -1

Query: 392 KKPKKIPRCGQGKSKLPGIQPARPAERF 309
           K+ KK+    +GK+K+ G  P  P E F
Sbjct: 25  KEAKKLQGITKGKAKVTGNNPVDPIEEF 52


>SPAC26A3.12c |dhp1||5'-3' exoribonuclease Dhp1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 991

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 19/57 (33%), Positives = 25/57 (43%)
 Frame = +1

Query: 115 PFPWRPFLPAHLWWPWLRLLGHFTNLPGPSDPRKPLDDAAAFTPFVHRDTLHKRASL 285
           PF W   L   +   +L +  +  NLP P D  + +DD   F  FV  D L    SL
Sbjct: 291 PFIW---LNVSILREYLEVELYVPNLPFPFDLERAIDDWVFFIFFVGNDFLPHLPSL 344


>SPBC428.15 |||GTP binding protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 409

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 10/31 (32%), Positives = 17/31 (54%)
 Frame = +2

Query: 233 LLSRHLCTETPSINALHWSFCGYRNENALRA 325
           ++ RH+ T+   +N L   F GY +  A+ A
Sbjct: 159 IVRRHIATKANPVNTLQSQFSGYGSTPAVTA 189


>SPCC4G3.19 |alp16||gamma tubulin complex subunit Alp16
           |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 759

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/36 (27%), Positives = 19/36 (52%)
 Frame = -3

Query: 519 LEKSVLRNGATAYIQTTFVLQHKVKPKENSTNSWSS 412
           ++ S ++N A+ + Q T  +  KVK   ++   W S
Sbjct: 719 IQNSAIKNAASVHEQCTKAIYQKVKELFDTMKLWES 754


>SPBC2F12.10 |||mitochondrial ribosomal protein subunit
           L35|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 15/40 (37%), Positives = 22/40 (55%), Gaps = 5/40 (12%)
 Frame = +1

Query: 184 TNLPGPSDPRKPLDDAAAF----TPFVHR-DTLHKRASLV 288
           TN+P  +  R P+D + AF     P VHR +  H+  +LV
Sbjct: 261 TNIPIEASKRVPIDTSKAFFQYRPPIVHRGEDKHRILTLV 300


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,005,341
Number of Sequences: 5004
Number of extensions: 40493
Number of successful extensions: 124
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 117
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 122
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)