Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_E03
(539 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0790 - 21214282-21214369,21214455-21214564,21215478-212155... 77 7e-15
08_01_0372 + 3286861-3286939,3287220-3287299,3289041-3289150,328... 77 7e-15
09_04_0106 - 14636773-14636863,14636948-14637057,14638107-146381... 76 2e-14
03_05_0099 - 20764949-20765233 29 1.8
11_04_0071 - 13165019-13165082,13165345-13165428,13166325-131665... 29 3.1
12_02_0690 - 22168299-22168393,22168478-22168640,22168716-221689... 28 5.5
07_01_0862 - 7172083-7172931 28 5.5
02_03_0034 - 14142518-14142923,14142935-14143269,14143976-141440... 28 5.5
03_05_0642 - 26346260-26346367,26347902-26348162,26348542-263498... 27 9.6
>08_02_0790 -
21214282-21214369,21214455-21214564,21215478-21215557,
21215659-21215737
Length = 118
Score = 77.4 bits (182), Expect = 7e-15
Identities = 40/73 (54%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Frame = -1
Query: 497 MVQRLTFRRRLSYNTKSNQRRIVRTPGVRLVYQYVKKPKKIPRCGQGKSKLPGIQPARPA 318
MVQRLT+R+R SY TKSNQ R+V+TPG RLVYQY KK P+C K+ GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 317 E--RFRFCTRKKT 285
E R R ++T
Sbjct: 61 EYKRSRLSRNRRT 73
>08_01_0372 +
3286861-3286939,3287220-3287299,3289041-3289150,
3289224-3289311
Length = 118
Score = 77.4 bits (182), Expect = 7e-15
Identities = 40/73 (54%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Frame = -1
Query: 497 MVQRLTFRRRLSYNTKSNQRRIVRTPGVRLVYQYVKKPKKIPRCGQGKSKLPGIQPARPA 318
MVQRLT+R+R SY TKSNQ R+V+TPG RLVYQY KK P+C K+ GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGRLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 317 E--RFRFCTRKKT 285
E R R ++T
Sbjct: 61 EYKRSRLSRNRRT 73
>09_04_0106 -
14636773-14636863,14636948-14637057,14638107-14638186,
14638302-14638380
Length = 119
Score = 76.2 bits (179), Expect = 2e-14
Identities = 39/73 (53%), Positives = 48/73 (65%), Gaps = 2/73 (2%)
Frame = -1
Query: 497 MVQRLTFRRRLSYNTKSNQRRIVRTPGVRLVYQYVKKPKKIPRCGQGKSKLPGIQPARPA 318
MVQRLT+R+R SY TKSNQ R+V+TPG +LVYQY KK P+C K+ GI RPA
Sbjct: 1 MVQRLTYRKRHSYATKSNQTRVVKTPGGKLVYQYTKKRASGPKCPVTGKKIQGIPHLRPA 60
Query: 317 E--RFRFCTRKKT 285
E R R ++T
Sbjct: 61 EYKRSRLSRNRRT 73
>03_05_0099 - 20764949-20765233
Length = 94
Score = 29.5 bits (63), Expect = 1.8
Identities = 21/59 (35%), Positives = 27/59 (45%)
Frame = -1
Query: 278 ARLWRVSLCTNGVKAAASSRGFLGSEGPGRFVKCPKRRNQGHHKCAGKKGRQGKGKVLN 102
AR WR L + A G+ GP R V+ P+RR +G K G G+ G LN
Sbjct: 38 ARWWRRPL----EEEEAVRPGWAALSGPARLVRRPERREEGKEKKRG-MGQMGVWPKLN 91
>11_04_0071 - 13165019-13165082,13165345-13165428,13166325-13166524,
13166756-13170655
Length = 1415
Score = 28.7 bits (61), Expect = 3.1
Identities = 12/50 (24%), Positives = 21/50 (42%)
Frame = +2
Query: 212 ESLLTMPLLSRHLCTETPSINALHWSFCGYRNENALRASRAGYRVVYSCP 361
E + P L + + P + L S C + E + R + +Y+CP
Sbjct: 876 EKHIIFPCLEELVIRDCPELRTLGLSPCSFETEGSHTFGRLHHATIYNCP 925
>12_02_0690 -
22168299-22168393,22168478-22168640,22168716-22168913,
22169080-22169240,22169341-22169828,22169954-22170012,
22170301-22170418,22170519-22170628
Length = 463
Score = 27.9 bits (59), Expect = 5.5
Identities = 19/69 (27%), Positives = 30/69 (43%)
Frame = -1
Query: 515 KNLCYEMVQRLTFRRRLSYNTKSNQRRIVRTPGVRLVYQYVKKPKKIPRCGQGKSKLPGI 336
K L Y + + + ++ N R G ++ ++ K ++IP CGQ S L G
Sbjct: 385 KQLAYANISGIQYDHKMVNNYPVPLHRF-HCGGTSMLTDFIPK-QQIPTCGQYNSALAG- 441
Query: 335 QPARPAERF 309
QP E F
Sbjct: 442 QPFESTENF 450
>07_01_0862 - 7172083-7172931
Length = 282
Score = 27.9 bits (59), Expect = 5.5
Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 1/70 (1%)
Frame = -1
Query: 371 RCGQGKSKLPGIQPARPAERFRFCTRK-KTSEARLWRVSLCTNGVKAAASSRGFLGSEGP 195
RC + + + G++ RP R+ R K + R+W + T AAA L GP
Sbjct: 53 RCQEVERRFTGVR-RRPWGRWAAEIRDPKENGRRVWLGTFDTAEAAAAAYDDACLRLRGP 111
Query: 194 GRFVKCPKRR 165
G + P RR
Sbjct: 112 GAALNLPSRR 121
>02_03_0034 -
14142518-14142923,14142935-14143269,14143976-14144068,
14144704-14145674,14145714-14145812,14146011-14146488,
14146717-14146929
Length = 864
Score = 27.9 bits (59), Expect = 5.5
Identities = 18/74 (24%), Positives = 30/74 (40%)
Frame = -1
Query: 422 PGVRLVYQYVKKPKKIPRCGQGKSKLPGIQPARPAERFRFCTRKKTSEARLWRVSLCTNG 243
P +L KKP P+ K+ + PAE FC+ + EA + + CT+
Sbjct: 567 PAKKLEQPAQKKPSSAPK----PKKVKFLSLLTPAELVHFCSIVQYEEATVSSIQRCTSL 622
Query: 242 VKAAASSRGFLGSE 201
+ A G + +
Sbjct: 623 ITRIAKGLGVVSDQ 636
>03_05_0642 - 26346260-26346367,26347902-26348162,26348542-26349849,
26349960-26350178,26350241-26350300,26352159-26352215,
26352945-26353029,26353486-26353843,26353931-26355170
Length = 1231
Score = 27.1 bits (57), Expect = 9.6
Identities = 15/51 (29%), Positives = 24/51 (47%)
Frame = -1
Query: 464 SYNTKSNQRRIVRTPGVRLVYQYVKKPKKIPRCGQGKSKLPGIQPARPAER 312
S N NQ+R+V+ G + +KP+++ + KL G RP R
Sbjct: 1123 SNNQSQNQQRLVQVGGKQGAA--TQKPQRLSNARPAREKLKGDNAKRPGSR 1171
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,486,744
Number of Sequences: 37544
Number of extensions: 294087
Number of successful extensions: 804
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 788
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 804
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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