Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_E03
         (539 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical...    84   7e-17
U58749-6|AAU05599.2|  276|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical pr...    29   2.8  
U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical pr...    29   2.8  
AL110495-1|CAB60408.1|  268|Caenorhabditis elegans Hypothetical ...    27   6.5  
AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical ...    27   6.5  
U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical pr...    27   8.6  
U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthas...    27   8.6  

>CU457741-15|CAM36357.1|  110|Caenorhabditis elegans Hypothetical
           protein C42C1.14 protein.
          Length = 110

 Score = 83.8 bits (198), Expect = 7e-17
 Identities = 47/99 (47%), Positives = 60/99 (60%)
 Frame = -1

Query: 497 MVQRLTFRRRLSYNTKSNQRRIVRTPGVRLVYQYVKKPKKIPRCGQGKSKLPGIQPARPA 318
           M  R+T+RRRLSYNT SN++R+V+TPG RLV QY+KK  +IP+C     KL GI PARP 
Sbjct: 1   MSLRVTYRRRLSYNTTSNKKRLVKTPGGRLVVQYIKKRGQIPKCRDTGVKLHGITPARPI 60

Query: 317 ERFRFCTRKKTSEARLWRVSLCTNGVKAAASSRGFLGSE 201
              R   R + +  R +   L  N VK    +R FL  E
Sbjct: 61  -ALRLLKRNERTVTRAYGGCLSPNAVKERI-TRAFLVEE 97


>U58749-6|AAU05599.2|  276|Caenorhabditis elegans Hypothetical
           protein B0496.3c protein.
          Length = 276

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 296 RKKTSEARLWRVS-LCTNGVKAAASSRGFLGSEGPGRFVKCPKRRNQ 159
           R+KTSE R+     L TNG  +  SSR F     P   +K   R+N+
Sbjct: 159 RRKTSEVRMGADGKLVTNGYDSTPSSRDFKRPSSPIDRIKSLFRKNE 205


>U58749-5|AAU05597.1| 1551|Caenorhabditis elegans Hypothetical protein
            B0496.3a protein.
          Length = 1551

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 296  RKKTSEARLWRVS-LCTNGVKAAASSRGFLGSEGPGRFVKCPKRRNQ 159
            R+KTSE R+     L TNG  +  SSR F     P   +K   R+N+
Sbjct: 1434 RRKTSEVRMGADGKLVTNGYDSTPSSRDFKRPSSPIDRIKSLFRKNE 1480


>U58749-4|AAU05598.1| 1592|Caenorhabditis elegans Hypothetical protein
            B0496.3b protein.
          Length = 1592

 Score = 28.7 bits (61), Expect = 2.8
 Identities = 18/47 (38%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
 Frame = -1

Query: 296  RKKTSEARLWRVS-LCTNGVKAAASSRGFLGSEGPGRFVKCPKRRNQ 159
            R+KTSE R+     L TNG  +  SSR F     P   +K   R+N+
Sbjct: 1475 RRKTSEVRMGADGKLVTNGYDSTPSSRDFKRPSSPIDRIKSLFRKNE 1521


>AL110495-1|CAB60408.1|  268|Caenorhabditis elegans Hypothetical
           protein Y60A9.1 protein.
          Length = 268

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 9/23 (39%), Positives = 17/23 (73%)
 Frame = -3

Query: 222 KRLSWIRRTRKIREMS*KAQPGP 154
           +R+SW R   ++RE+S +++P P
Sbjct: 79  RRISWSREADRVREISPRSEPEP 101


>AC084153-7|AAK84593.1|  451|Caenorhabditis elegans Hypothetical
           protein Y22D7AL.4 protein.
          Length = 451

 Score = 27.5 bits (58), Expect = 6.5
 Identities = 23/75 (30%), Positives = 35/75 (46%), Gaps = 3/75 (4%)
 Frame = -2

Query: 487 GLHSDDVCLTTQSQTKGE*Y---ELLEFAWYTSMLRNLRRSRGVVRARVNYPVSSPRGPQ 317
           G+ +DDV  +T S T  E Y   E L+    TS+  +L++ R        +   SP  PQ
Sbjct: 161 GVQTDDVTTSTVSTTTTEPYLDIEQLQPILLTSISHHLKQHRP-------HKSLSPPPPQ 213

Query: 316 SVFVSVPAKRPVKRV 272
            +   +PAK   K +
Sbjct: 214 KISTEIPAKPAQKSI 228


>U64842-2|AAB37084.1|  462|Caenorhabditis elegans Hypothetical
           protein F25B4.6 protein.
          Length = 462

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 214 KPLDDAAAFTPFVHRDTLHKRASLVFLRVQKRKRSAGLAGWIPGS 348
           K LDD   FTP    +TL KR   VFLR ++  +S       P +
Sbjct: 389 KRLDDRIQFTPEEFTETLQKRE--VFLRSKEIPKSPSETSLFPNT 431


>U12787-1|AAA92672.1|  458|Caenorhabditis elegans HMG CoA synthase
           protein.
          Length = 458

 Score = 27.1 bits (57), Expect = 8.6
 Identities = 17/45 (37%), Positives = 22/45 (48%)
 Frame = +1

Query: 214 KPLDDAAAFTPFVHRDTLHKRASLVFLRVQKRKRSAGLAGWIPGS 348
           K LDD   FTP    +TL KR   VFLR ++  +S       P +
Sbjct: 385 KRLDDRIQFTPEEFTETLQKRE--VFLRSKEIPKSPSETSLFPNT 427


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,235,857
Number of Sequences: 27780
Number of extensions: 233811
Number of successful extensions: 613
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 564
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 612
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1081316076
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)