Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_E02
(589 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces p... 28 1.2
SPBC530.15c ||SPBC661.01|spermidine family transporter |Schizosa... 28 1.2
SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces... 27 2.0
SPAC11E3.11c |||guanyl-nucleotide exchange factor |Schizosacchar... 27 2.7
SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto... 26 4.7
SPAC1F8.03c |str3||siderophore-iron transporter Str3 |Schizosacc... 26 4.7
SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomy... 26 4.7
SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|... 25 8.2
SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|c... 25 8.2
SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces po... 25 8.2
SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces pombe... 25 8.2
>SPAC10F6.14c |||ABC1 kinase family protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 535
Score = 27.9 bits (59), Expect = 1.2
Identities = 16/61 (26%), Positives = 32/61 (52%), Gaps = 1/61 (1%)
Frame = +3
Query: 9 RVNLLTDRLCKRKVKY*KMAPSGALYVALACILAVVASDLPHPLSDAFINLI-NKKQNTW 185
+++ L R+ +R K + +G LY+ + I+A+ +++LP AF + N Q W
Sbjct: 101 KIDALHQRVAQRLFK--TIYKNGGLYIKMGQIIAMQSNNLPEAYGKAFQGMFDNAPQVEW 158
Query: 186 K 188
+
Sbjct: 159 E 159
>SPBC530.15c ||SPBC661.01|spermidine family transporter
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 516
Score = 27.9 bits (59), Expect = 1.2
Identities = 15/55 (27%), Positives = 25/55 (45%), Gaps = 2/55 (3%)
Frame = +3
Query: 255 DEYILKLPKVTHDAELIANL--PENFDPRDKWPECPTLNEIRDQGSCGSCWAFGA 413
+E + K P +++ + I L P++ D WP L + GS C FG+
Sbjct: 37 EESLKKYPVISNPQDFIVTLDGPDDPDLAVNWPLAKKLRNVAVMGSACLCAGFGS 91
>SPBP16F5.03c |||phosphatidylinositol kinase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 3699
Score = 27.1 bits (57), Expect = 2.0
Identities = 10/24 (41%), Positives = 17/24 (70%)
Frame = -3
Query: 203 EVPASFPCVLFLIYQIYKRI*ERM 132
+V A FP ++FL++Q YK + +M
Sbjct: 240 KVTAEFPIIVFLLFQTYKDLIPKM 263
>SPAC11E3.11c |||guanyl-nucleotide exchange factor
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 942
Score = 26.6 bits (56), Expect = 2.7
Identities = 20/57 (35%), Positives = 26/57 (45%)
Frame = -1
Query: 442 MHTRSVIASTAPKAQQLPHDP*SLISFNVGHSGHLSLGSKFSGRFAISSAS*VTLGN 272
M + S I S+ P QLP P + +SF + LG FS +SS S T N
Sbjct: 137 MTSMSSITSSTPTPSQLPVRPSTSLSF----FDDIPLGPSFSAETILSSLSISTSNN 189
>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
Sec74|Schizosaccharomyces pombe|chr 1|||Manual
Length = 928
Score = 25.8 bits (54), Expect = 4.7
Identities = 11/32 (34%), Positives = 20/32 (62%)
Frame = -1
Query: 100 HASATYRAPEGAIFQYFTFLLQSRSVNKLTRN 5
+A +T+ +P + T+L +S+SVN L+ N
Sbjct: 200 YAGSTFGSPSRSSIDSSTYLPRSKSVNSLSSN 231
>SPAC1F8.03c |str3||siderophore-iron transporter Str3
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 630
Score = 25.8 bits (54), Expect = 4.7
Identities = 13/49 (26%), Positives = 23/49 (46%)
Frame = -1
Query: 274 NFNIYSSFNAPINILMCANGVCVGKFRPAFHVFCFLFIKFINASESGWG 128
++ ++ FN + I +C GV G FH + +L I + G+G
Sbjct: 403 SYRDWTYFNNTMTIALCVFGVFAGAMHRVFHRYKYLQIIGLVIKIVGYG 451
>SPCPB1C11.02 |||amino acid permease, unknown 16|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 505
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/27 (33%), Positives = 13/27 (48%)
Frame = +3
Query: 504 ICGLGCNGGMPTLAWEYWKHVGLVSGG 584
+C LG N + + YWK G + G
Sbjct: 194 LCNLGVNNEKKFIGFRYWKDPGAFNNG 220
>SPBC21C3.12c |||DUF953 family protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 124
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/38 (34%), Positives = 17/38 (44%)
Frame = +3
Query: 249 LKDEYILKLPKVTHDAELIANLPENFDPRDKWPECPTL 362
LK+ L V + L + DPR K P CPT+
Sbjct: 5 LKESLESTLANVAKNETLFVAYLASVDPRTKQPWCPTV 42
>SPBC15D4.03 |slm9||hira protein Slm9|Schizosaccharomyces pombe|chr
2|||Manual
Length = 807
Score = 25.0 bits (52), Expect = 8.2
Identities = 11/24 (45%), Positives = 15/24 (62%)
Frame = -1
Query: 583 PPDTSPTCFQYSQAKVGIPPLQPR 512
PP PT YSQ ++G P L+P+
Sbjct: 438 PPVPHPTSL-YSQIRIGCPYLKPK 460
>SPAC2F3.10 |||GARP complex subunit Vps54 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 949
Score = 25.0 bits (52), Expect = 8.2
Identities = 13/36 (36%), Positives = 19/36 (52%)
Frame = -1
Query: 124 SLATTARIHASATYRAPEGAIFQYFTFLLQSRSVNK 17
SL ++ +A + A E QYFT ++ RSV K
Sbjct: 439 SLQAALTLYKTAVFEAFENLAQQYFTDGVEMRSVRK 474
>SPAC7D4.03c |||conserved fungal family|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 886
Score = 25.0 bits (52), Expect = 8.2
Identities = 14/43 (32%), Positives = 25/43 (58%), Gaps = 3/43 (6%)
Frame = +3
Query: 60 KMAPSGALYVALACILAV---VASDLPHPLSDAFINLINKKQN 179
++APS + A+ L + + S + PLS+ FIN IN++ +
Sbjct: 125 EIAPSSLINKAVQSTLRLSEPLVSPIKCPLSEQFINFINQQDS 167
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,417,114
Number of Sequences: 5004
Number of extensions: 48939
Number of successful extensions: 139
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 135
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 254167452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -