Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D22
         (378 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr 2|...    25   3.9  
SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr 1|...    24   6.9  
SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces pomb...    24   9.1  

>SPBC19G7.04 |||HMG box protein |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 362

 Score = 25.0 bits (52), Expect = 3.9
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 378 SIRTQRQTCGVCKSSLRT*LPR 313
           SI  Q+Q C +CKS ++   P+
Sbjct: 281 SINPQKQVCRLCKSQIKQICPK 302


>SPAC22H10.08 |||DUF2009 protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 492

 Score = 24.2 bits (50), Expect = 6.9
 Identities = 13/51 (25%), Positives = 21/51 (41%)
 Frame = +3

Query: 60  KRFTRCGLVQELRRQGFDESLMSNWVCLVENESGRFTDKIGKVNKNGSRDY 212
           + + +  ++ +  R GFD S   NW        GR T      N   ++DY
Sbjct: 427 REYLKKTILTDFMRFGFDGSGADNWFDAGSCIDGRLTSAWNWANNIHTKDY 477


>SPAC24C9.05c |mug70||conserved protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 730

 Score = 23.8 bits (49), Expect = 9.1
 Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 2/41 (4%)
 Frame = +3

Query: 84  VQELRRQGF--DESLMSNWVCLVENESGRFTDKIGKVNKNG 200
           V + R++ +  DE+L    +  +  +SG F   + K+ +NG
Sbjct: 20  VSDTRKRQYQRDEALRKKIISELGKKSGNFESPVRKIRRNG 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,525,701
Number of Sequences: 5004
Number of extensions: 28271
Number of successful extensions: 58
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 58
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 58
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 122233080
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)