Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I09A02NGRL0006_D21
(592 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr 1|||Ma... 101 6e-23
SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyce... 31 0.095
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ... 28 1.2
SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|ch... 27 1.5
SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces pom... 27 2.0
SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|c... 26 3.6
SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr ... 26 4.7
SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4 family|S... 26 4.7
SPAP27G11.12 |||human down-regulated in multiple cancers-1 homol... 25 6.2
>SPAC4A8.15c |cdc3||profilin|Schizosaccharomyces pombe|chr
1|||Manual
Length = 127
Score = 101 bits (243), Expect = 6e-23
Identities = 49/127 (38%), Positives = 73/127 (57%), Gaps = 1/127 (0%)
Frame = +2
Query: 32 MSWQDYVDKQLMASRCVSKAAIAGHDGN-VWAKSEGFEISKDEVAKIVAGFENESLLTSG 208
MSWQ YVD L+ + + +AAI G+ VWA S GF +S E+ + AGF++ +
Sbjct: 1 MSWQAYVDTSLLGTGKIDRAAIVSRAGDSVWAASAGFNLSPQEIQGLAAGFQDPPSMFGT 60
Query: 209 GVTIAGTRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGD 388
G+ +AG +YI + R I KL K G+ C+ T+ +++S Y E P +AA + E L D
Sbjct: 61 GIILAGQKYITIRAEGRSIYGKLQKEGIICVATKLCILVSHYPETTLPGEAAKITEALAD 120
Query: 389 YLITCGY 409
YL+ GY
Sbjct: 121 YLVGVGY 127
>SPAC30D11.10 |rad22||DNA repair protein Rad22|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 469
Score = 31.5 bits (68), Expect = 0.095
Identities = 14/31 (45%), Positives = 19/31 (61%)
Frame = +1
Query: 286 RRALHEDTASRRNFSL*RTHSTPAGRIRSRE 378
+R+LH+ T S L RT+S P +RSRE
Sbjct: 426 KRSLHDSTTSHNKSDLMRTNSDPQSAMRSRE 456
>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
Length = 690
Score = 27.9 bits (59), Expect = 1.2
Identities = 13/40 (32%), Positives = 24/40 (60%)
Frame = -3
Query: 194 VIHSQNRQLSSPLHLLIFRTLLTWPRHFRRDRQLLPLKHI 75
+I+ ++ L SPLHL RT+ ++ RH + ++ L+ I
Sbjct: 300 LIYQKDFHLISPLHLTTLRTVPSFQRHIEQRLEIGDLESI 339
>SPBC56F2.08c |||RNA-binding protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 661
Score = 27.5 bits (58), Expect = 1.5
Identities = 19/46 (41%), Positives = 22/46 (47%), Gaps = 3/46 (6%)
Frame = -3
Query: 134 LLTW--PRHFRRDRQLLPLKHIWRPL-TVCRHNLASSF*ISSIKNK 6
LLTW F R+R L H+ L T C H LAS+ I NK
Sbjct: 354 LLTWLLDNSFFRNRHRLLAIHLATHLHTTCTHKLASTLIFKLINNK 399
>SPCC16A11.08 |atg20||sorting nexin Atg20|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 534
Score = 27.1 bits (57), Expect = 2.0
Identities = 15/44 (34%), Positives = 22/44 (50%)
Frame = -2
Query: 207 PLVRSDSFSKPATIFATSSFDISNPSDLAQTFPS*PAIAAFETH 76
PLV ++S S P++ +SNPS + PS P + E H
Sbjct: 175 PLVMANSLSPPSSRALKPIHSLSNPSTASSLEPSSPLGSEDECH 218
>SPCC338.16 |pof3||F-box protein Pof3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 577
Score = 26.2 bits (55), Expect = 3.6
Identities = 16/60 (26%), Positives = 28/60 (46%), Gaps = 5/60 (8%)
Frame = +2
Query: 38 WQDYVDKQ-----LMASRCVSKAAIAGHDGNVWAKSEGFEISKDEVAKIVAGFENESLLT 202
W+D + K+ + C S ++ D NV A + SKD + +++ G E +LT
Sbjct: 166 WRDCIKKEPSLFCCLDFSCASPRSVNSRDRNVMAVARYSVYSKDNIQEVI-GLEKLGILT 224
>SPAC8E11.10 |||sorbose reductase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 255
Score = 25.8 bits (54), Expect = 4.7
Identities = 9/19 (47%), Positives = 13/19 (68%)
Frame = +1
Query: 220 SGHAVHLPQRYRTYHTRKA 276
SGH + PQ++ +YH KA
Sbjct: 150 SGHIANWPQQWASYHATKA 168
>SPAC227.12 |||U4/U6 x U5 tri-snRNP complex subunit Prp4
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 462
Score = 25.8 bits (54), Expect = 4.7
Identities = 21/67 (31%), Positives = 32/67 (47%)
Frame = +2
Query: 218 IAGTRYIYLSGTERIIRAKLGKVGVHCMKTQQAVVISLYEEPIQPQQAASVVEKLGDYLI 397
++ RYI SG R I A G G C+K + SL + + ++ V+ GD I
Sbjct: 394 VSDVRYIE-SGVNRFI-ATSGYDG--CVKLWNPLNCSLIKSMVGHEEKVMSVDGYGDRFI 449
Query: 398 TCGY*RS 418
+ GY R+
Sbjct: 450 SSGYDRT 456
>SPAP27G11.12 |||human down-regulated in multiple cancers-1 homolog
1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 797
Score = 25.4 bits (53), Expect = 6.2
Identities = 10/21 (47%), Positives = 17/21 (80%)
Frame = -2
Query: 519 ERSLSLHRIYKMQLLISLWTK 457
ERS LHR+ ++LL+SL+++
Sbjct: 182 ERSYELHRVEVLRLLLSLFSE 202
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,390,877
Number of Sequences: 5004
Number of extensions: 46761
Number of successful extensions: 164
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 160
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 256184654
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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