Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D20
         (483 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyce...    27   1.1  
SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces ...    26   3.4  
SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity prote...    25   4.5  
SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1 ...    25   6.0  
SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|ch...    25   6.0  
SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2 |Schizosacc...    25   7.9  

>SPBC18E5.03c |sim4||kinetochore protein Sim4 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 277

 Score = 27.5 bits (58), Expect = 1.1
 Identities = 14/38 (36%), Positives = 21/38 (55%)
 Frame = +3

Query: 357 ASLFATVLEDTLTELQILVECNSELRIIKTMSDMQQLL 470
           ASLF  +L DT   +Q L +  S L + +++    QLL
Sbjct: 6   ASLFRNILNDTENLVQPLTQDESRLALFESLVQSDQLL 43


>SPAC17H9.14c |||protein disulfide isomerase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 359

 Score = 25.8 bits (54), Expect = 3.4
 Identities = 13/34 (38%), Positives = 20/34 (58%)
 Frame = +3

Query: 342 LSYMLASLFATVLEDTLTELQILVECNSELRIIK 443
           LS+++ +LFA V    + ELQ L E  + +R  K
Sbjct: 6   LSFVIFALFALVFASGVVELQSLNELENTIRASK 39


>SPBC106.01 |mph1|SPBC1271.16c, SPBC243.01|dual specificity protein
           kinase Mph1 |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 678

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 11/43 (25%), Positives = 24/43 (55%)
 Frame = +3

Query: 354 LASLFATVLEDTLTELQILVECNSELRIIKTMSDMQQLLSLKY 482
           +  L+A  + DTL +L +++EC         M +M++ ++L +
Sbjct: 376 IIKLYAAEVNDTLGQLNMVMECGETDLANLLMKNMKKPINLNF 418


>SPAC29E6.03c |uso1|SPAC30.07c|ER to Golgi tethering factor Uso1
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1044

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 23/62 (37%), Positives = 32/62 (51%), Gaps = 7/62 (11%)
 Frame = +3

Query: 246 DATSETAIKVTFIEDEPTKLNSELNNNDG-DNSLSYMLASLFATV------LEDTLTELQ 404
           D  SE+  KVTFI+   TKL + L + +   N + Y L  L A V      ++D L+E  
Sbjct: 465 DEDSESEDKVTFIQCVSTKLIATLRHENALQNCVGY-LTLLIALVYGNPDSVKDFLSESS 523

Query: 405 IL 410
           IL
Sbjct: 524 IL 525


>SPAC6G9.06c |pcp1||pericentrin Pcp1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1208

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +3

Query: 282 IEDEPTKLNSELNNNDGDNSLSYMLASLFATVLEDTLTELQILVECNSELRIIKTMSDMQ 461
           +E+E   L S+L   + DN+   ++ S     +E   T+ + + E  + LR++ + +  +
Sbjct: 433 LEEERDVLESKLQTLEDDNNSLRLMTSSLGNQIESLRTQNREIDEEKNHLRLLASKNSDK 492

Query: 462 QL 467
            L
Sbjct: 493 AL 494


>SPBC4.04c |mcm2|cdc19, nda1|MCM complex subunit Mcm2
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 830

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 11/42 (26%), Positives = 22/42 (52%)
 Frame = +3

Query: 192 INRSKATNY*MRKEVVQMDATSETAIKVTFIEDEPTKLNSEL 317
           I   +A +  +R+  +++DA +       F++DE   L+S L
Sbjct: 105 IGARRAVDARLRRRDIELDAAAGRTKPAAFLQDEDDDLDSNL 146


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,677,468
Number of Sequences: 5004
Number of extensions: 28618
Number of successful extensions: 85
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 83
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)