Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D20
         (483 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_02_0752 - 10922456-10922644,10922719-10922796,10922888-109230...    29   2.6  
01_06_1310 - 36176008-36176472,36176547-36176774,36177313-361780...    27   6.0  
02_04_0624 + 24538095-24538183,24538429-24538612,24538725-245388...    27   7.9  
02_01_0372 + 2668597-2668671,2669021-2669126,2669279-2669334,266...    27   7.9  

>03_02_0752 -
           10922456-10922644,10922719-10922796,10922888-10923016,
           10923105-10923152,10923243-10923333,10923517-10923648,
           10923869-10924086,10925121-10925271,10925360-10926009,
           10926715-10926786,10926938-10926985,10927105-10927242,
           10927750-10927756,10928064-10928212
          Length = 699

 Score = 28.7 bits (61), Expect = 2.6
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +2

Query: 161 GCSDQVTTYTNQPVKGDQLLNEERSCTDGCYLRNSD 268
           GCS  +   + +   G +L   +R C D CYLR  +
Sbjct: 106 GCSQNLVFPSEKQPYGHELDENKRPCGDQCYLRRRE 141


>01_06_1310 -
           36176008-36176472,36176547-36176774,36177313-36178080,
           36178250-36178732,36179883-36180010,36180539-36180607,
           36180688-36180892,36181005-36181067
          Length = 802

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 15/40 (37%), Positives = 24/40 (60%)
 Frame = +3

Query: 243 MDATSETAIKVTFIEDEPTKLNSELNNNDGDNSLSYMLAS 362
           ++ T+    K  F +DE +  N+EL+N DG +SL   +AS
Sbjct: 764 LEPTNYDRFKQGF-QDEDSNRNAELSNADGASSLGEAVAS 802


>02_04_0624 +
           24538095-24538183,24538429-24538612,24538725-24538886,
           24538988-24539225,24539301-24539370,24539439-24539530,
           24539799-24539836,24540018-24540039,24540462-24540618,
           24540702-24540753,24542144-24542207,24542279-24542362,
           24543418-24543543,24543622-24543818,24543903-24544091,
           24544186-24544434,24544507-24544556,24544977-24545059,
           24545164-24545449,24545751-24545794,24545878-24546626
          Length = 1074

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/43 (27%), Positives = 24/43 (55%), Gaps = 2/43 (4%)
 Frame = +2

Query: 188 TNQPVKGDQLLNEERS--CTDGCYLRNSDKSYFH*RRTYETEL 310
           T  P+  D  LN+E +  C++GC +    + YF  ++ Y++ +
Sbjct: 513 TGDPLVHDLSLNQEMNSICSNGCRVAKCMREYFIYKKNYKSAI 555


>02_01_0372 +
           2668597-2668671,2669021-2669126,2669279-2669334,
           2669830-2669907,2669993-2670066,2670147-2670280,
           2670377-2670472,2670703-2670854
          Length = 256

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 20/58 (34%), Positives = 28/58 (48%)
 Frame = +3

Query: 285 EDEPTKLNSELNNNDGDNSLSYMLASLFATVLEDTLTELQILVECNSELRIIKTMSDM 458
           E E  KL SE+N+ND +N LS         V++    E  ++ + N EL   K   DM
Sbjct: 110 EIEQLKLGSEMNSNDLENKLS-------CAVVQQATNE-AVIKQLNLELEAHKAHIDM 159


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,766,499
Number of Sequences: 37544
Number of extensions: 153055
Number of successful extensions: 392
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 390
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 392
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)