Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D20
         (483 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical pr...    28   4.1  
Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical pr...    28   4.1  
AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein...    28   4.1  
U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter...    27   7.1  
AF039713-10|AAB96721.1|  691|Caenorhabditis elegans Hypothetical...    27   9.4  
AC006675-2|AAK84549.1|  333|Caenorhabditis elegans Serpentine re...    27   9.4  

>Z81522-9|CAB61005.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 228  KEVVQMDATSETAIKVTFIEDEPTKLNSELNNNDGDNSLS 347
            K VVQ+   +ETA  +    D PT L  E+N++ GD + S
Sbjct: 2360 KRVVQV--LTETATTIADCHDIPTYLIDEMNDSGGDTTES 2397


>Z81063-9|CAB61012.2| 3674|Caenorhabditis elegans Hypothetical protein
            F15D3.1a protein.
          Length = 3674

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 228  KEVVQMDATSETAIKVTFIEDEPTKLNSELNNNDGDNSLS 347
            K VVQ+   +ETA  +    D PT L  E+N++ GD + S
Sbjct: 2360 KRVVQV--LTETATTIADCHDIPTYLIDEMNDSGGDTTES 2397


>AJ012469-1|CAA10033.1| 3674|Caenorhabditis elegans DYS-1 protein
            protein.
          Length = 3674

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 16/40 (40%), Positives = 23/40 (57%)
 Frame = +3

Query: 228  KEVVQMDATSETAIKVTFIEDEPTKLNSELNNNDGDNSLS 347
            K VVQ+   +ETA  +    D PT L  E+N++ GD + S
Sbjct: 2360 KRVVQV--LTETATTIADCHDIPTYLIDEMNDSGGDTTES 2397


>U67956-2|AAB07691.2| 1254|Caenorhabditis elegans Dumpy : shorter
           than wild-typeprotein 6 protein.
          Length = 1254

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 23/80 (28%), Positives = 32/80 (40%), Gaps = 1/80 (1%)
 Frame = +3

Query: 180 QPTRINRSKATNY*MR-KEVVQMDATSETAIKVTFIEDEPTKLNSELNNNDGDNSLSYML 356
           +PT   +S AT      +E V  + TS T  K     +EPT  +      +   +     
Sbjct: 603 EPTTAEKSTATQKPTTTQESVSTEKTSTT--KKASTTEEPTTTDEPTTTTESSTTGKATT 660

Query: 357 ASLFATVLEDTLTELQILVE 416
             L  T  E T TEL+I  E
Sbjct: 661 PELSTTSEETTTTELKITTE 680


>AF039713-10|AAB96721.1|  691|Caenorhabditis elegans Hypothetical
           protein F57B10.4 protein.
          Length = 691

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 19/68 (27%), Positives = 31/68 (45%)
 Frame = +3

Query: 180 QPTRINRSKATNY*MRKEVVQMDATSETAIKVTFIEDEPTKLNSELNNNDGDNSLSYMLA 359
           +P+ +NR  + +         + ATSE +I     +DE + LN   N    D  L+ +  
Sbjct: 546 RPSEVNRPASVSSKRHDPAASISATSEESILSGTTQDE-SMLNDFFNPTGTDEKLNDVEF 604

Query: 360 SLFATVLE 383
           S+ A V E
Sbjct: 605 SMTAHVAE 612


>AC006675-2|AAK84549.1|  333|Caenorhabditis elegans Serpentine
           receptor, class h protein34 protein.
          Length = 333

 Score = 26.6 bits (56), Expect = 9.4
 Identities = 13/40 (32%), Positives = 18/40 (45%)
 Frame = +1

Query: 337 IVCLICLLHYLQPYWKILLQSFRFLSSATANLESSRRCLT 456
           + C+I L  Y  PY   LL+  R+      N  S+   LT
Sbjct: 294 VACIISLFLYYDPYQNYLLKVVRYKPRRRKNKSSTIAALT 333


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,104,807
Number of Sequences: 27780
Number of extensions: 155441
Number of successful extensions: 441
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 435
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 441
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)