Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D20
         (483 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse tr...    23   2.3  
AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    22   4.0  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   6.9  
AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precurso...    21   6.9  

>DQ494417-1|ABF55368.1|   42|Apis mellifera telomerase reverse
           transcriptase protein.
          Length = 42

 Score = 22.6 bits (46), Expect = 2.3
 Identities = 8/16 (50%), Positives = 10/16 (62%)
 Frame = -1

Query: 351 YKTNYCLHHYYLIQSS 304
           Y   YCLHH  LI+ +
Sbjct: 17  YFQQYCLHHKILIKKN 32


>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 21.8 bits (44), Expect = 4.0
 Identities = 9/27 (33%), Positives = 12/27 (44%)
 Frame = +1

Query: 139 CIFGILNGLFGSSDNLHESTGQRRPTI 219
           C F +L   F S      STG+ +  I
Sbjct: 393 CFFSLLRDAFTSKGEYRMSTGEMKEAI 419


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 7/12 (58%), Positives = 8/12 (66%)
 Frame = +2

Query: 350 YACFTICNRTGR 385
           Y C  +CNR GR
Sbjct: 245 YNCERLCNRLGR 256


>AJ517411-1|CAD56944.1| 1770|Apis mellifera vitellogenin precursor
            protein.
          Length = 1770

 Score = 21.0 bits (42), Expect = 6.9
 Identities = 6/16 (37%), Positives = 14/16 (87%)
 Frame = -3

Query: 316  NSEFSFVGSSSMKVTF 269
            N +F+F+ +S++++TF
Sbjct: 957  NPDFAFIVNSNLRLTF 972


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 109,165
Number of Sequences: 438
Number of extensions: 2137
Number of successful extensions: 4
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 4
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13174803
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)