Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D19
         (346 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|...    25   4.4  
SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces pomb...    24   5.8  

>SPAC1006.03c |||human CCDC131 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 714

 Score = 24.6 bits (51), Expect = 4.4
 Identities = 18/55 (32%), Positives = 25/55 (45%)
 Frame = +2

Query: 170 TRRKGKQGNSKQNENRLSLLLIRLCQNLKQLRKTARTLKNKTMSRMLHVSMSSET 334
           ++RK    NS  N N+          N  Q  K  R LK+   SR L  ++SS+T
Sbjct: 111 SKRKRSSENSFNNRNKAKSSETSDSSNTSQSFKENRALKDTATSRPL--ALSSDT 163


>SPAC24C9.11 |||MIF4G/MA4 domain protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 5.8
 Identities = 12/33 (36%), Positives = 18/33 (54%)
 Frame = -3

Query: 239 ILLAVDSTDFRFVCCFLVFLSFWCLLRSFTSVN 141
           I+  V+  +F+ V C LV+      LRS T +N
Sbjct: 371 IVFFVELYNFQLVSCVLVYDLIRLFLRSLTELN 403


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.316    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,041,651
Number of Sequences: 5004
Number of extensions: 15931
Number of successful extensions: 52
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 51
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 52
length of database: 2,362,478
effective HSP length: 64
effective length of database: 2,042,222
effective search space used: 102111100
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.6 bits)