Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D19
         (346 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex det...    21   3.1  
DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.4  
DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholi...    21   5.4  
U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodops...    20   7.2  
AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength rhodo...    20   7.2  

>AY352277-1|AAQ67418.1|  418|Apis mellifera complementary sex
           determiner protein.
          Length = 418

 Score = 21.4 bits (43), Expect = 3.1
 Identities = 7/20 (35%), Positives = 12/20 (60%)
 Frame = +3

Query: 153 KRSQKAPEGKENKETANKTK 212
           K   K+PE ++   T+N +K
Sbjct: 84  KTKSKSPESRDRSNTSNTSK 103


>DQ026034-1|AAY87893.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 230 LIRLCQNLKQLRKTARTLKNKTMSRMLHVSMS 325
           ++R+C  LK  +     LKN+ M+  L V  S
Sbjct: 53  VLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQS 84


>DQ026033-1|AAY87892.1|  569|Apis mellifera nicotinic acetylcholine
           receptor alpha4subunit protein.
          Length = 569

 Score = 20.6 bits (41), Expect = 5.4
 Identities = 11/32 (34%), Positives = 17/32 (53%)
 Frame = +2

Query: 230 LIRLCQNLKQLRKTARTLKNKTMSRMLHVSMS 325
           ++R+C  LK  +     LKN+ M+  L V  S
Sbjct: 53  VLRVCIKLKLSQLIDVNLKNQIMTTNLWVEQS 84


>U26026-1|AAA69069.1|  377|Apis mellifera long-wavelength rhodopsin
           protein.
          Length = 377

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 206 FVCCFLVFLSFWCLLRS 156
           FV  FL+  S+W ++++
Sbjct: 226 FVPLFLIIYSYWFIIQA 242


>AF091732-1|AAD02869.2|  154|Apis mellifera long-wavelength
           rhodopsin protein.
          Length = 154

 Score = 20.2 bits (40), Expect = 7.2
 Identities = 6/17 (35%), Positives = 12/17 (70%)
 Frame = -3

Query: 206 FVCCFLVFLSFWCLLRS 156
           FV  FL+  S+W ++++
Sbjct: 102 FVPLFLIIYSYWFIIQA 118


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.316    0.134    0.388 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 64,789
Number of Sequences: 438
Number of extensions: 1010
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 51
effective length of database: 124,005
effective search space used:  7812315
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 39 (20.7 bits)