Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I09A02NGRL0006_D18
         (258 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces ...    51   2e-08
SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|ch...    25   1.3  
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo...    25   1.7  
SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|ch...    25   1.7  
SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyce...    25   2.2  
SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyce...    24   2.9  
SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr 2|||M...    24   2.9  
SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatas...    24   3.8  
SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine decarboxylase|Schizo...    23   6.7  
SPAC29B12.07 |sec16||multidomain vesicle coat component Sec16|Sc...    23   6.7  
SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr 1||...    23   8.9  
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca...    23   8.9  

>SPAC17A2.03c |vma6||V-type ATPase subunit d|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 343

 Score = 51.2 bits (117), Expect = 2e-08
 Identities = 22/45 (48%), Positives = 34/45 (75%)
 Frame = +1

Query: 7   EFQHLRNHSVEPLSTFLDFITYSYIIDNIILLITGTLHQRPISEL 141
           EF  +R  + E LS F+D+ITY+Y+IDNI+LL+TGT++ +   +L
Sbjct: 77  EFDLIRRQADETLSKFMDYITYAYMIDNIMLLLTGTVNGQDTHDL 121



 Score = 36.7 bits (81), Expect = 5e-04
 Identities = 15/31 (48%), Positives = 21/31 (67%)
 Frame = +2

Query: 137 NLIPKCHPLGSFEQMEAIHVAATTAELYNAV 229
           +L+ +CHPLG FE + A+ VA    ELY+ V
Sbjct: 120 DLLERCHPLGWFETLPALCVATNVEELYSVV 150


>SPAC14C4.07 |||membrane transporter|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 644

 Score = 25.4 bits (53), Expect = 1.3
 Identities = 12/30 (40%), Positives = 18/30 (60%), Gaps = 2/30 (6%)
 Frame = -1

Query: 219 YSSAVVAA--TWIASICSNEPRGWHLGIKF 136
           Y S VVA+  +++A     E R W+LG+ F
Sbjct: 259 YISTVVASQNSFVADCSKTEFRAWYLGLNF 288


>SPAC1687.20c |mis6||inner centromere protein
           Mis6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 672

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 10/23 (43%), Positives = 15/23 (65%)
 Frame = +1

Query: 52  FLDFITYSYIIDNIILLITGTLH 120
           FLDF+T    I N+++L+T   H
Sbjct: 140 FLDFLTLRPYISNLLVLLTKHYH 162


>SPBC725.08 |||transcription factor |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 609

 Score = 25.0 bits (52), Expect = 1.7
 Identities = 8/18 (44%), Positives = 15/18 (83%)
 Frame = +2

Query: 191 HVAATTAELYNAVFGGHS 244
           H++ATT +LYN++ G ++
Sbjct: 93  HISATTEDLYNSLHGTYN 110


>SPAC823.16c |mug179||WD repeat protein Mug179|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 335

 Score = 24.6 bits (51), Expect = 2.2
 Identities = 10/42 (23%), Positives = 22/42 (52%)
 Frame = -1

Query: 234 PNTALYSSAVVAATWIASICSNEPRGWHLGIKFRNRSLMQST 109
           PN++  SS  V+++W   + SN  + W    +F    + +++
Sbjct: 248 PNSSPTSSVTVSSSWSKYLTSNVAKVWDTRKEFATAKIPEAS 289


>SPAC3H1.12c |snt2||Lid2 complex subunit Snt2 |Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1131

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 6/15 (40%), Positives = 7/15 (46%)
 Frame = +1

Query: 193  CCCHYCRAV*CSIWW 237
            CCC  C +     WW
Sbjct: 1103 CCCSKCNSTMSPFWW 1117


>SPBC29A3.06 |||CGI-48 family|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 556

 Score = 24.2 bits (50), Expect = 2.9
 Identities = 18/52 (34%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +1

Query: 7   EFQHLRNHSVEPLSTFLDF-ITYSYIIDNIILLITGTLHQRPISELDSQMPS 159
           EF  L   SV P S    F  + SYI  +  LL  GT++ + + + + Q PS
Sbjct: 165 EFNALSEKSVIPKSLKSLFKSSVSYINQSSKLLAPGTINIKRLKDANFQAPS 216


>SPCC1739.12 |ppe1|esp1, ppx1|serine/threonine protein phosphatase
           Ppe1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 305

 Score = 23.8 bits (49), Expect = 3.8
 Identities = 10/20 (50%), Positives = 14/20 (70%)
 Frame = +1

Query: 58  DFITYSYIIDNIILLITGTL 117
           DF+T + +IDN IL + G L
Sbjct: 145 DFLTLAAVIDNKILCVHGGL 164


>SPBC16E9.18 ||SPBC1E8.01|phosphatidylserine
           decarboxylase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 437

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 11/35 (31%), Positives = 22/35 (62%)
 Frame = +2

Query: 104 LRVLCIKDLFLNLIPKCHPLGSFEQMEAIHVAATT 208
           +R+   KDL  N   K  P+G+F+  EA++ ++++
Sbjct: 349 IRIKFDKDLCTNQFGKLGPVGTFD--EAVYTSSSS 381


>SPAC29B12.07 |sec16||multidomain vesicle coat component
           Sec16|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1995

 Score = 23.0 bits (47), Expect = 6.7
 Identities = 9/20 (45%), Positives = 14/20 (70%)
 Frame = +1

Query: 103 ITGTLHQRPISELDSQMPSS 162
           I  +  Q+ +SE+D Q+PSS
Sbjct: 62  IANSSSQQSVSEIDIQLPSS 81


>SPAC1006.06 |rgf2||RhoGEF Rgf2|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1158

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 10/24 (41%), Positives = 14/24 (58%)
 Frame = +2

Query: 119 IKDLFLNLIPKCHPLGSFEQMEAI 190
           I DLFL+ +PK  P   +   +AI
Sbjct: 526 IGDLFLDYVPKFEPFIKYGANQAI 549


>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
           catalytic subunit Arm1|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 811

 Score = 22.6 bits (46), Expect = 8.9
 Identities = 11/25 (44%), Positives = 15/25 (60%)
 Frame = -3

Query: 250 SKGVSTKYCIIQLCSSGSNMDSLHL 176
           SK V  K CI++  S+ S   +LHL
Sbjct: 242 SKLVPLKDCILKALSTSSTKRNLHL 266


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,219,706
Number of Sequences: 5004
Number of extensions: 22323
Number of successful extensions: 55
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 54
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 55
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)